RNA id: TCONS_00006016


Basic Information

Item Value
RNA id TCONS_00006016
length 2770
lncRNA type sense_over
GC content 0.44
exon number 5
gene id XLOC_002668
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15881309 ~ 15964029 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCGAGCCATTATTTCGCAAACACAAACACGTGGGCAGTGTTCGTAAGTGTATTAAGAATGTTTTAATGATGACTGTGGGTCAGTGTTGACTTTGAACTCTGATGCAAAAGATGCCATCTGTGCAGAAGCATTTTCCTTTGGCCTTTGAACGCTCCAGAATGTGTGCTTCTTTGTGGAGGGGCCACACTCCTGTTCCTGCTGAACTGAGCCAGTGATTTACTACAACTGATATCAGCTCAGAAGGCACCGGAGCTCAGGTCCTGATGAGACACACAACTCCAAACAGATTATCAGCTGACATCAGATGACCAGtcACAAATCAGCATGCCAAGAACCCACACAGCCACAACAAGCTGGAGACCCCCGTCATCCCACCCAAACTCCTGCCTCTGCACGCTTGGCTTCACTTTAGCTGTTTTTCTGCCCCTCGTCGACTCTCACCACCCTCCTGAAGGCTTTTCTGATGGTCTGTCCGAAGAATTAATGACTGCTAATGAACAAGGGGGGCTGAGGCCAAGGCAAAGTGGTAGGAAATGATCTGAGAAATTAGTCCCGTCTCTCGACTCCTCCATTAGCGGCATGAACGTGCACCTTTTGCACACTCCGAACAGAGAAACAACACCAATCCACCCCCATCAAGACCACTCATCATGAACACATAACAGGCCAGACCCCTCACTCAACCCCGGCCTGACCTTATCATGTGAGAGAGCGGAGATTAGAGCTCTTGGCCCCTCTTTCAAAGCCGAAAAACAACATCGCCTCTCTGGCCACGAGCCAGGGGTGCTAGTTTAAATTAGAGAGCATCCTTTCACACTTGACATTTAGTGGGGGACAGTATATCTTCACCTTATTTCCACACCCCCTGagtctcattaacacacacagacTCTGTTTTGTTTGGATTGGATTACCCATTAGACTGCTTAAATCAGCTtgacttaaagggataattcaaccaaaaataaaaatttactcattatttactaatGTTGCTCTAAAAAGagtttcttctattaaacacaaaagaagatattttgaagaatgttagcaAACAAAAAGTAGATGCTTTCTTGACTCATGAGCATTTGAGTGTATGGTTAAACAGTAGTCTAAggcgccacctgctgttaaaaactagcctagagcaccatctgctgttacaaactagtGTGCcacctgcttttaaaaactagcctacagtgccaactgctgttaaaaactagcctagagtgccaactgctgttaaaaactagcctacagtgccaactgctgttaaaaactagtctagagcgccacctgctgttaaaagtAGCTtagagtgccacctgctgttacaaactatcctggagcaccacctgctgttaaaaactagccttgagtgCCACATGCTTTAAAAACtcttaatgtgcattttaaaaactagcatagagcgccgcctgctgttaaaaactagcctagagaaccaatgctgttaaaaactagcctagagcaccaactgctgttaaaaactagcctagagcaccaactgctgttacaaactattgtgccaactgctgttaaaaactagtctagagcaccacctgctgttaaaagtAGCTTAGAGTGCCACCTGCTTTTAAAACTGGCTTAGAGTGTCCATAAAAACTAGccatagagcgccgtctgctcttaaaaactagcctgctgcaccacctgctgttaaaaactagtctagagcaccaatgctgtttaaaactagcccagtgcaccacctgctgttataaaactagcctagagcaccaactgcttttaaaaaacagcctAGAGCACTACCTgttgttacaaactagcctagtgtgccacctgctgttaaaaactagcctacagccgcaactgtttttaaaaactagtctagagcgccacctgctgttaaaagtAGCTTAGTGCACactctgctgttaaaagctagcctaaaGCACAATTTGCTGTTccaaactagcctaaagcaccaacTGCTAAAAATTAGTTGAGTGCGCAGCCTGCTGTTAAAACTCtcctagagcaccacctgctgttacAAATAGTCTAGAGCATttactgctgttaaaaactagcctagggtgccacctgttgttaaaaacttgcctagagcaccaattgctgttaaaactagcctagggtGCCACCTGCTGTAAAAAGAAGCCTAGAGCACCAATttctgttaaatactagcctagagcgccatctgctgttaaaaactagcctagggtGATgcttgttgttaaaaactagcatagagtgccatctgctgtcaaaaactagcctagttcACCACCTGCTTTTACAAATAGTCTAGAGCATTtactgcagttaaaaactagtctagaacgccaattgctgttaaaaaaaatagcctagagcgccacctgctgttaaaaactagcctagagcaataactgctggtaaaaactagcctagagcaccaattgctgataaaaactagcctagaacgccgcctgctgttaaaaactagcctagagcgccgcctgctgttacAATCTAACCTAGtgtgccacctgctgttaaaaataaGGCTAGAGCAccaactgctgttaaaaattatCCTAGAGCACCaactgctggtaaaaactagcctagagcgccgcctgctgttaaaaactagcctagagcaccaactgctggtaaaaactagcctagagcaccgattgctgttaaaaactagccttgagcacCAACTGCTGggaaaaactatcctagagccccaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005752 lncRNA downstream 214809 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004955 lncRNA downstream 307555 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00004943 lncRNA downstream 852616 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 854866 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004971 lncRNA upstream 492350 16456335 ~ 16459677 (-) False XLOC_002671
TCONS_00005757 lncRNA upstream 1042240 17006225 ~ 17010898 (-) True XLOC_002673
TCONS_00006018 lncRNA upstream 1052814 17016799 ~ 17019170 (-) False XLOC_002674
TCONS_00006019 lncRNA upstream 1052814 17016799 ~ 17019175 (-) False XLOC_002674
TCONS_00006020 lncRNA upstream 1052814 17016799 ~ 17027111 (-) True XLOC_002674
TCONS_00004961 mRNA downstream 19074 15881309 ~ 15919839 (-) False XLOC_002668
TCONS_00004962 mRNA downstream 27939 15895918 ~ 15910974 (-) False XLOC_002668
TCONS_00004959 mRNA downstream 59344 15815877 ~ 15879569 (-) False XLOC_002667
TCONS_00004958 mRNA downstream 84170 15815865 ~ 15854743 (-) False XLOC_002667
TCONS_00004960 mRNA downstream 89886 15816795 ~ 15849027 (-) True XLOC_002667
TCONS_00004965 mRNA upstream 42920 16006905 ~ 16028082 (-) True XLOC_002669
TCONS_00004966 mRNA upstream 97670 16061655 ~ 16067194 (-) False XLOC_002670
TCONS_00004967 mRNA upstream 98159 16062144 ~ 16062565 (-) False XLOC_002670
TCONS_00004968 mRNA upstream 98159 16062144 ~ 16065185 (-) True XLOC_002670
TCONS_00004969 mRNA upstream 349866 16313851 ~ 16474216 (-) False XLOC_002671
TCONS_00004954 other downstream 319898 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 598581 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 998567 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 1206514 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1450759 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 1113448 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1140313 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1181834 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1378380 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1529496 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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