RNA id: TCONS_00052004


Basic Information

Item Value
RNA id TCONS_00052004
length 1854
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_026706
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44048907 ~ 44060037 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTTGAACTGGTCGTCTGGACGTTTTGTGTGAGACAGAGAAGCAAATTAAGTTTCTTATGTTTTACTTCGCGAACGAGGAAACCTATAGGATATAGGATGTCTTCCTCATTATTTCTTTACCAGATCATCCTCACACTCGTCTGCCAAGCACTTTGTGACGATCCCATTAAGGACTTCAATTGTTTTAATGACTACGAGGCCGAGATGACGTGCAGTTTCTCTTCTGAAAGTCTCAGAAATTGTTCTGGATACAATATGAACGTCACACAAAAACTAGCATATGAGATAAATAGGTATTCATGCGTCTTTGAGAGAAGTCATCACAATGCCATTTGTGAATGCAAAATTGAAGTGGAAGGCTTTATTACTGAAGAGATCTTCTCCACTACACTTCTCAAGGGAACAAAGGTTTTATTACAAAGGGATTTCAAGACTATAGATTATATCAAACCAAAAACTCCAGTGTTATTTGTGAAGAAGACAGAAAATGGAAACTTTCATGTTACCTGGGTTGATAGCTATGAACAAAGGAATGTCTTTACAGATAATTTGTTTATAACTCTGACCTATAGGATCAAAGGAGAAATTGAAACAAATTCCACAAAGGTGGCAAACACTGTTGGATTCTGTGATATCGTGGGCAGTCTTCTCCAGCCAAAAACTGAATACATTCTGACAGCAAAAATGAGCTCGAACTACAACGGTCAGAAGATATATAGTGATCAGAGTGCAGCAGTTCATTTCACCACTGCTCCATTACCTAATGAAATAGTCAAACTGGTGGTTCCACCATTGTGTATTGGTTTACTCATCATCATTTGTATGACCTTCATCTGTTTTTTGAGGATGAAGTCAAATTGGTGGGACAAGATCGCCAAGCCAACAATTAAAGACAATTTTGGAAATAAGAAGGGTCAAGTTTTGCCTCCTTCCTCCAATGCAGTCTACCCAAACCAAGTTGAGGTTATTAATCTAGACTTCGAGGAGGAAAAGAAAtcgATCTCACCAGTATGTGTGAACCCAAACAACGAGAGAAGTTCTCACAGTGTTGAATCATCACCAGGGGATTATGGCCAGGCCGTCTGTGATTCTGGTAGCAATCCGGTGCAAGACATCCGATCACAACTTGAATTCGCAATAGCTCAAGATAATTTACGGTTGAAATGGAACACACCACTCAACCAGTTCACTGAGATGCCATACAACAGTGTGGAGTCTTCTTCAAAGGAAAGGAATCGTGCTAACAGAGATTCGGGGACCTGCTCGGGTTCATCGGTTTTCAGCAACAAGTCATATTTGGAAGGAACCACTGATGATTCTTCATTTTTGGACCTGAACTGTGATCATTCTGATGATAGAAAAGTCTCAGACTCCATATTTAAGCTGGAAAACTCTATTGATATCATTAAGAGCCTGCAGAACTTTCCTGATGAAGGATATCAGGCTTTCAGTGCTGTTGTGGAAAAGAGAGATGTTGTAGATGGTTGTGCGAAACTTTCCTCTAATGTTGATGCAGACGACAATGTGATCAGGCAAAATCTAATCACCAGTGCCAATCCACTGTATTCTCCTCTGTTACATCATGATCACACAATCGCAAGGGATGATCCCTATAAAGCTTTTCAAGACGTATCAAAAAACACGGGGGGACAATGGAGCACGAGCATCAGCACTGAGCGAACACTTAATGAATGTGGAGCTCTGAAATTCCCTCACATCGCCGGCCAAACAGCCCTGTTACAGAACACTGCTTGGGACTTTTTGAATATCCCACCGACTGTTGAAATAGACCTTTCATATCACGCTGTCTAACTGTGTCGCACATAAGTAAAACATTTCAGTCTCTTTGC

Function

GO:

id name namespace
GO:0002532 production of molecular mediator involved in inflammatory response biological_process
GO:0031099 regeneration biological_process
GO:0022008 neurogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019979 interleukin-4 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050227-5 Enables interleukin-4 binding activity. Acts upstream of or within neurogenesis and regeneration. Located in plasma membrane. Is expressed in several structures, including digestive system; gill; immune system; integument; and ovary. Human ortholog(s) of this gene implicated in several diseases, including acne; allergic conjunctivitis; autoimmune disease (multiple); human immunodeficiency virus infectious disease; and renal tuberculosis. Orthologous to human IL4R (interleukin 4 receptor).

Ensembl:

ensembl_id ENSDART00000158485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051995 lncRNA downstream 159534 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 173848 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 362508 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053099 lncRNA downstream 466622 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 859892 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053100 lncRNA upstream 51643 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 272845 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1479884 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 1716478 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 1772175 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052001 mRNA downstream 36173 44002947 ~ 44012804 (-) False XLOC_026705
TCONS_00052000 mRNA downstream 36229 44002300 ~ 44012748 (-) False XLOC_026705
TCONS_00052002 mRNA downstream 36229 44008250 ~ 44012748 (-) True XLOC_026705
TCONS_00051998 mRNA downstream 89104 43942288 ~ 43959873 (-) False XLOC_026704
TCONS_00051997 mRNA downstream 94004 43942288 ~ 43954973 (-) False XLOC_026704
TCONS_00052006 mRNA upstream 21718 44081620 ~ 44094248 (-) False XLOC_026707
TCONS_00052009 mRNA upstream 21748 44081650 ~ 44094451 (-) False XLOC_026707
TCONS_00052008 mRNA upstream 21748 44081650 ~ 44094451 (-) False XLOC_026707
TCONS_00052010 mRNA upstream 29121 44089023 ~ 44094451 (-) True XLOC_026707
TCONS_00052011 mRNA upstream 481420 44541322 ~ 44753325 (-) True XLOC_026710
TCONS_00051981 other downstream 1182777 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2736834 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3519198 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3519199 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3890290 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 21721 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 3135235 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 5017860 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 5755295 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6044169 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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