RNA id: TCONS_00052022


Basic Information

Item Value
RNA id TCONS_00052022
length 785
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_026717
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45776370 ~ 45778123 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAGTAGAAGATCGTGGTACAAAGAGGTTTGTAAATTGAAAAACAATGGCCCGTACTAAGCAGACCGCGCGTAAATCCACTGGAGGAAAGGCGCCAAGAAAACAGCTGGCAACTAAAGCCGCCAGGAAAAGCGCGCCCTCTACTGGAGGAGTGAAGAAGCCTCACAGATACAGGTGAGCGAATGAGACGCGCTGAGTGACATTAACAGACACAAAGATGTCTATCTTCTGTTTTACAcgtttaaatttttacatttcagGCCCGGAACTGTTGCTCTGAGAGAAATTCGTCGTTATCAGAAGTCAACAGAGTTGCTCATCCGCAAGTTGCCGTTTCAGCGTCTGGTCAGAGAAATCGCACAGGATTTCAAAACTGACCTGAGGTTCCAGAGTGCTGCTATTGGCGCTCTTCAGGAAGCAAGTGAGGCCTACCTTGTCGGTCTATTTGAGGACACCAACTTGTGCGCCATTCATGCCAAGAGAGTAACAATCATGCCCAAGGATATCCAGCTTGCAAGGCGAATCAGAGGAGAGAGGgcttaatttttactttttttatttcaacttttAAAGAGAAACACTCATAAGTAAAAGCAATGGATTTGTACATTGGAGTCATTTTGTAAAGCATTCCTTACAGACTCAGGTTTTTAAAGTGAGTGTGTCTAGATTTACATTTGTAGTGCTCATTGTAAGGCAGCTTTAGTTGCATGCTTAGTATTTATCtcttcctttttcttttctttttccatcGATCATTGGGTTGTAAATAAAATTTACTCTAC

Function

GO:

id name namespace
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-65 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDART00000145937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053102 lncRNA downstream 232929 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00053101 lncRNA downstream 1440527 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1652010 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1886937 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 1901251 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052487 lncRNA upstream 53968 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052024 lncRNA upstream 55731 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052488 lncRNA upstream 375018 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052028 lncRNA upstream 446480 46224589 ~ 46225847 (-) False XLOC_026723
TCONS_00052030 lncRNA upstream 446488 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052019 mRNA downstream 414807 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052018 mRNA downstream 449483 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052016 mRNA downstream 467986 45283391 ~ 45308394 (-) False XLOC_026713
TCONS_00052017 mRNA downstream 477893 45286086 ~ 45298487 (-) True XLOC_026713
TCONS_00052015 mRNA downstream 495030 45261387 ~ 45281350 (-) True XLOC_026712
TCONS_00052023 mRNA upstream 40517 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052025 mRNA upstream 66898 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA upstream 68090 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052027 mRNA upstream 265297 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052037 mRNA upstream 599196 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052007 other downstream 1682154 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2910180 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 4464237 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5246601 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5246602 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1417028 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3299653 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 4037088 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4325962 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5770024 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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