RNA id: TCONS_00052014


Basic Information

Item Value
RNA id TCONS_00052014
length 3743
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_026711
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45195219 ~ 45250924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGCAGCCATTTATCTTGTCACTTACATGAAAAGGTGATAAACGACGTGCCTTTGAAGTAAATGACTCATTTTCTGCTTCTGATCTTGGATGACATACATCATGCGGCGCTCTGAGGATCCACAGAATTATCCCAATCCACAGGGAAAAAAGCAATAAAGATATAAATGAACAGTCATTAAAGGTCATGCATTTTTAATCCGTGTCCTATATTGAGCATCCCAGCTCTTCTTTATTGGCATGAGGTCTGTGTGTAGATCAAGTGTGCTGTAGAACGGTGGGCTTCAGGGGGAGAGAAGAAACACACTGTTGGGATTCAGAGATGCTGGTCTCATGTTACAGCAGACCTCAGTCAAATGACCTTCAATACGCAACAACAGGATCATCAGTGACGGCGaatGCTGTTTCTAGGAGTGCCATGCAATATCGGGGAAATGCACAACACGATGCCCAGGAGTTTCTTCTCTGGTTACTGGACCGCGTCCATGAAGACCTCAACCATCTGGTACACCCCAACATCAGAGGATCTGTTAAGCCACCCACAGAGGAAGACGATGCAGCTTTAGAGGGACCTTCCCCTCCTCTGTCAGCCGGCTCATTTGTCCAGGAGCTGTTTCAAGCTCAGTACAGATCCTCGCTAACCTGTCCACACTGTCAGAAACAGAGCAACACTTTTGATCCTTTTCTGTGTATCTCCCTCCCGATTCCATTACCTCACACACGGCCTCTGTATGTGACTGTGGTTTATCAAGGCAAGTACTCTCACTGCATGAGGATCGGTGTGGCCGTACCGCTCAACAGCACTGTGTCCAGACTGAGAGAGGCCGTGTCACGCGAGACCAAGATCCCACCCGACCAGTTTGTCCTGACTGAAATGTATTACGACGGTTTCCACCGCTCCTTTTGTGACGATGACGACGATCTTGATATCATTCAAGAAAGTGACTCAGTCTTTGCTTTTGAAACCCCTGAGACTTTTAGATTAGAAAACATTCGCTCTAAAAGAGGGAGCCTCCTTGCGAATCTGAATCAAAATAATTTGAAATACGGAGCAGAGAGCAGCCGGACGCCGTCTTTCATGCAGGGCGCAGTGAATCCAGCATCGCCCAACAAAAACACTGGATCTGAGAAAATGATTCTGCTGATCTGTAACAGAGCCTGCACTGGCCATCAAGGACGGAGgTTCGGCCTTCCATTTGTACTATATCTAGAGCGCAGTGTGACGTGGGACGTGTTACAGAAGGAGATCCTGGAGAAAATGCGTCACCTGACAAGGCCAGGGGTTTACGTTCAGattggACCCTTCAGTCTGCGAGTTGTCGGAGTGGTTGGAATCACCTATCTGCTGCCGCAAGAGGAGCAGCCCCTGTGTCATCCAACTGTGGAAAGAGCATATAAGTCCTGTGGGCCAGGAGGACCTCCTCATGTTAAGATTGTAGTGGAGTGGGACAAGGAGACAAAGGAATATTTGTTTGGACACACTGAGGAAGAGTACATCCCTGATGCTGAGAGTGTGTATCTGCACAGAGAGCAGCACCATCAGCCGCAGGCCTGCACCCTCGCTCAGTGCTTCCAGCTCTACACCAAAGAGGAGCAGTTGGCCCCAGATGATGCCTGGCGTTGCCCACATTGCAGGCAGCTGCAACAGGGACGGATCAAACTCAGCCTGTGGACCCTGCCGGATGTTCTCATACTGCACCTCAAGAGGTTTAGACAGGAAGGAGATAGGAGGGTTAAGATGCAGAACATGGTGAGATTTCCTTTGCTTGGTATGGATATGGCACCACACGTGGTGAAAAGAAGCCAGAGCAGCTGGAGCTTGCCTTCCCACTGGTCACCTTGGAGAAGGCCTTACGGACTCGGACGTAACCCAGACGACTACCTGTATGATCTCTATGCTGTGTGTAACCATCATGGCAATATGCATGGAGGACATTACACAGCGTACTGTAAGAATTCCATTGATGGCCAGTGGTATTGCTTCGATGACAGTGAGGTGCAGCCTGTAGCAGATGAAGACGTCTGTCAGCAGACCGCATACATTCTGTTCTATCAAAGGAGGACAACTATTCCCTCATGGTCGGCAAACAGCTCTGTTGCAGGTTCCACCAGTTCATCTTTATGTGAACACTGGGTTAACCGACTGCCAGGCAGCAGGCCACCTAGTTTGGCGTCCGGAGCCTCCTCAAGACGTACATCCCTGATCTCTCTGGCAGAGTCGGTGGAGTTTCCCGGTGACCGCAGTGAAGACGATGgaGGATTTTCAACAAGGCCCTTCGTGAGAAGCATTCAGCGGCAGAGCTTGTCCTCCAGATCATCTGTTACAAGCCCACTGGCTTTCAGCGAAAATGGGATGAAACCTTCCTGGTCTCTGTCCACTAAACTCCAAATGAGATCCAACTCACCCTCGCGATTGTCTTTGGACTCTCGCTCTTCACCTCCTCTAGAGAGGATAGGAGAAGCTTGTGATGATAAAGTGTCCACGTCTTGCTTTGGCGGCTACAGCAGACATGAGCGTCAGCCTAGCAGTAAAGCCCCGTTGGCCATGATGGAGGGTAACGGTAGTGACGATGGTAATGGCAAACGAATCCTAGACGAGGCTTACTGCCGAGCTCCACTACAGGCTGACAAGAAAAGTTCAAAAGGTGAGCCGGTTGACAACAATAACCAGATCAATGCTGTGGACCAGAACTCTCTCGGACCGCTCTCCAAAGAACAGAAACATAAGAGCTCAGAAAAGAAAACTGAAGGGTCTGGCAGCAAAAAGAGCTCTACTAAGACCAAGGGGGACCAAGAAAAGCCCTCCAAAAAGCGGCAGAGCACCTCCTCTGTTACAAAATCTCCATCCTCCCAAGTGTCTTCCAGCCCTCAAGTGAAGGGCACCAAAACGACCAATCTAAAAGAAAAGAGCAATTCTCCCAAAAGTACCAAGGGTACACCTTCAGGAACTCCCTCCAGAAAGAAAGAGTCTTCTGAGTCTCCAGTGTCAGGAGGCACAAAGGGAAAACCGTCCCTTACTTCCACACCCCAGTCCTCTGCCTCTCCCTCACCTACATCCAAGAAGAGTTCCTCGCTGGCTGAGAGGAACTCTGTTTCTGGCAAGAAGAAGCTGGTAGAGAGAGGCTCCAGCAAGGATTTGACACACACCAGTCCCCTTGCGGAGAAGTCTAGAGTCAGTGCCACCCCAGTACGGACATCCCAGCCTAGGACTGCTGAGGGAAGCCGTCCCGAAAGGAGGACTGTGAGAAGCTCCAGTAGTAGTTCCTCAGTCACCAGCCTGCGTTCCCCAAGTGTCTCCTCGAGAGACCTGTGCCGCAGCAGTAAATCTGAGGAAAAGGGACTCTCATTTTTTAGAAGTGCGCTTCGGCAAAAAGAAACCAGACGGTCAGCCGATCTGGGAAAGACCACAATTCTATCCAAGAAAGCTGCCGAGAGGACAGCAAAGTCCAGCAGCCAAAACAAACTCAATGCCGATGAGGGCGAAGGCTCTGGAAACTCTTCCCAGCAAGTCTCTCCGGAGCCTCGCTCCAACAAGTCTGCCAACAATGAGAAAGAGTCCTCGAAGAACTCCACTCCTAGCAAACGCTCACTCTTACCAGTAGGCAAGTCCAAGTCTTCCAATTCTGAGACTAGTCTTCTGTCTCCCATCAATGGGAAGAGGCCTCTTGAAAAGGTGGCATCCTCTAGAAAGCTTTCTTCCAGCATGCAAACCTCTGCACGGCCAACACAGACGCCTCAATGA

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100210-4 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human USP31 (ubiquitin specific peptidase 31).

Ensembl:

ensembl_id ENSDART00000109017

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053101 lncRNA downstream 859366 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1070849 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1305776 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 1320090 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 1508750 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053102 lncRNA upstream 288862 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 525456 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 581153 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052024 lncRNA upstream 582916 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052488 lncRNA upstream 902203 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052011 mRNA downstream 441894 44541322 ~ 44753325 (-) True XLOC_026710
TCONS_00052009 mRNA downstream 1100768 44081650 ~ 44094451 (-) False XLOC_026707
TCONS_00052008 mRNA downstream 1100768 44081650 ~ 44094451 (-) False XLOC_026707
TCONS_00052010 mRNA downstream 1100768 44089023 ~ 44094451 (-) True XLOC_026707
TCONS_00052006 mRNA downstream 1100971 44081620 ~ 44094248 (-) False XLOC_026707
TCONS_00052015 mRNA upstream 10463 45261387 ~ 45281350 (-) True XLOC_026712
TCONS_00052016 mRNA upstream 32467 45283391 ~ 45308394 (-) False XLOC_026713
TCONS_00052017 mRNA upstream 35162 45286086 ~ 45298487 (-) True XLOC_026713
TCONS_00052018 mRNA upstream 64553 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052019 mRNA upstream 92858 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052007 other downstream 1100993 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2329019 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 3883076 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 4665440 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 4665441 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1944213 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3826838 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 4564273 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4853147 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 6297209 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

//