RNA id: TU2266301


Basic Information

Item Value
RNA id TU2266301
length 272
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1982411
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40532135 ~ 40553006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacactgaaacacacacacacacacacacacagaaacacacacacacacacacacagaaacacacacacacacacagaaacacacacacacacacacacacacacagaaacacacacacacacacacacagaaacacacacacacacacacagaaacacacacacacacacacacacacacagaaacacacacacacacacacacacacacacacagaaacacacacacacacacagaaacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2266293 lncRNA upstream 5362 40525854 ~ 40526773 (+) True G1982403
TU2266251 lncRNA upstream 98814 40432012 ~ 40433321 (+) True G1982367
TU2266246 lncRNA upstream 101734 40430010 ~ 40430401 (+) True G1982366
TU2266171 lncRNA upstream 104456 40424607 ~ 40427679 (+) True LOC110505926
TU2266177 lncRNA upstream 196784 40334582 ~ 40335351 (+) True G1982304
TU2266312 lncRNA downstream 2530 40555536 ~ 40556034 (+) True G1982422
TU2266314 lncRNA downstream 4698 40557704 ~ 40559014 (+) True G1982424
TU2266317 lncRNA downstream 6120 40559126 ~ 40561124 (+) False G1982425
TU2266318 lncRNA downstream 6120 40559126 ~ 40561124 (+) True G1982425
TU2266323 lncRNA downstream 14277 40567283 ~ 40576363 (+) True G1982430
XM_036962859.1 mRNA upstream 77341 40440430 ~ 40454794 (+) False LOC110505917
XM_036962858.1 mRNA upstream 77341 40440434 ~ 40454794 (+) False LOC110505917
XM_036962857.1 mRNA upstream 77341 40440435 ~ 40454794 (+) True LOC110505917
XM_036962503.1 mRNA upstream 106427 40412129 ~ 40425708 (+) False LOC110505926
XM_021585396.2 mRNA upstream 167966 40356100 ~ 40364169 (+) True LOC110505920
XM_036962740.1 mRNA downstream 25662 40578668 ~ 40579658 (+) True LOC118944272
XM_036962284.1 mRNA downstream 136182 40689188 ~ 40741739 (+) False snx9a
XM_036962282.1 mRNA downstream 136187 40689193 ~ 40741738 (+) False snx9a
XM_036962283.1 mRNA downstream 154884 40707890 ~ 40741737 (+) True snx9a
XM_036963012.1 mRNA downstream 266690 40819696 ~ 40822826 (+) True pomca
TU2266230 other upstream 141728 40389658 ~ 40390407 (+) False G1982355
TU2266233 other upstream 141728 40389658 ~ 40390407 (+) False G1982355
TU2266234 other upstream 141866 40389658 ~ 40390269 (+) True G1982355
TU2265022 other upstream 978643 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1437321 39036366 ~ 39094814 (+) True G1981068
TU2267392 other downstream 494545 41047551 ~ 41047902 (+) True G1983277
TU2267517 other downstream 662469 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 744700 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 761141 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 895396 41448402 ~ 41449340 (+) False G1983499

Expression Profile