RNA id: TU2267392


Basic Information

Item Value
RNA id TU2267392
length 352
RNA type TUCP
GC content 0.42
exon number 1
gene id G1983277
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41047551 ~ 41047902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggcatcagaccgaggctctgcatctgtcctcgtgctcctagaccttagtgctgcttttgataccatcaatcaccacattctttcggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcggaaagatatcagtttgtctctgtgaatggtttgtcctctgacaaatcaactgtaaatttcggtgttcctcaaggttccattttaggaccactattgttttcactatatattttacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2267366 lncRNA upstream 34541 41012529 ~ 41013010 (+) True G1983252
TU2267362 lncRNA upstream 37514 41009823 ~ 41010037 (+) True G1983248
TU2267353 lncRNA upstream 51911 40995012 ~ 40995640 (+) True G1983239
TU2267339 lncRNA upstream 65873 40981409 ~ 40981678 (+) True G1983226
TU2267332 lncRNA upstream 72274 40973305 ~ 40975277 (+) True G1983220
TU2267406 lncRNA downstream 24613 41072515 ~ 41073681 (+) True G1983291
TU2267413 lncRNA downstream 33637 41081539 ~ 41081889 (+) True G1983298
TU2267425 lncRNA downstream 46300 41094202 ~ 41094429 (+) True G1983309
TU2267435 lncRNA downstream 60587 41108489 ~ 41108796 (+) True G1983319
TU2267436 lncRNA downstream 61625 41109527 ~ 41109811 (+) True G1983320
XM_036963050.1 mRNA upstream 156439 40868101 ~ 40891112 (+) True si:ch211-132f19.7
XM_036962950.1 mRNA upstream 187497 40829046 ~ 40860054 (+) True dnajc27
XM_036963012.1 mRNA upstream 224725 40819696 ~ 40822826 (+) True pomca
XM_036962284.1 mRNA upstream 305812 40689188 ~ 40741739 (+) False snx9a
XM_036962282.1 mRNA upstream 305813 40689193 ~ 40741738 (+) False snx9a
XM_036962870.1 mRNA downstream 249530 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA downstream 250091 41297993 ~ 41350749 (+) False LOC110504259
XM_036962969.1 mRNA downstream 499469 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 499575 41547477 ~ 41622795 (+) True LOC110505965
XM_036962230.1 mRNA downstream 588254 41636156 ~ 41663416 (+) False LOC110505964
TU2266230 other upstream 657144 40389658 ~ 40390407 (+) False G1982355
TU2266233 other upstream 657144 40389658 ~ 40390407 (+) False G1982355
TU2266234 other upstream 657282 40389658 ~ 40390269 (+) True G1982355
TU2265022 other upstream 1494059 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1952737 39036366 ~ 39094814 (+) True G1981068
TU2267517 other downstream 167573 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 249804 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 266245 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 400500 41448402 ~ 41449340 (+) False G1983499
TU2267651 other downstream 400500 41448402 ~ 41449340 (+) False G1983499

Expression Profile