RNA id: XM_036963050.1


Basic Information

Item Value
RNA id XM_036963050.1
length 3632
RNA type mRNA
GC content 0.54
exon number 20
gene id si:ch211-132f19.7
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40868101 ~ 40891112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAGGCGTCTCGGGGTGGAGCAGGACATAAGCGGCGTTCATCTGTAGCTCGTATCCACCCAGCCAATCAGGACCGAATGTCCACGGTGACCCAGAAGAGCAGCGACTCCCTCAGTGATGCTGACTACTTTGTCTCCTGGGGGTCTACAGTTAGAGGGGTCTTCCTGCCTGCCCTTCATCACACCTTCAAgtctccCGACCTGGAGAAGTTGTACCAGCAGCATGCATCAAGCCAGAGGATAACCTCTCTGGTTTTCACTAATGTTATCGACATCATCACCAAACTACACATCCTGGGTCTGACCCTATGGGCGGGGCCTCAGAGCCTGGACACAGCCAATGGTTGGCTGGTCGGCCTGTTCATCGCTGTGGGGGCTGGACTCTGCGTGCTGGTGCTCTGTTCTAAGGGAATGATGTCATCGCCAGAGTGGTTGAGGTACATGGCTCTAGCCAGCTGGTTGTCCCAGACAGTGCAGGTGTTGGGTGGTGTTGTGGGGGGTTTGGAGAAGGACCAAGCCTGGTACGTCCTCTTCACGCTGTTCTCCACCTACACCCTCCTGCCCCTCCCCTTGCTCTGGTCCCTCTCCACCGGCCTGCTCACCGCCACGCTGCACCTCCTGGTGGAAACTGTTCACCACTACGACGACACCGCGCTCTACagaaaggttctgGCGAAGGGCTTGTTGTACCTGGGTATGAACACAGCAGGGTTGTTCATCCACTACCTGTCagaccacacacagagacaggcgtTCCTGGAGACACGACGCTGCATTGAGGGACGAGTACGCCTGGAGAGGGAGAaccagagacagGAGCGCTTGGTGAACTCCATCATTCCGCGGTTCGTTGCCTTGGAGATGATCGCTGACATGTCCAACATGGATGATGACCTGATGTCACAGCAGTTCCACAAGATTTATATTCACCAGTACAAAAACgtcagTATTCTGTTTGCTGATATAAAAGGCTTCACGTCCCTGTCCATGGTCCTGTCGGCTCAGGAATTGGTCCGGACACTCAATGAGCTGTTTGGACGCTTCGACCGCCTGGCTGAGgagcacCACTGCATGCGTATCAAGATCCTTGGGGACTGTTACTACTGTGTGTCAGGAGTGCCAGAGCCAGAGACAGCTCACGCTCGCTGCTGTGTGGAGATGGGCCTCTCCATGATCAGCACCATAAAGTACGTGCGACGGgagctgaaacatgaggtggacATGCGTATCGGTGTCCACTCTGGCTCAGTGCTGTGTGGGGTGCTGGGGCTACAGAAGTGGCAGTTTGACGTGTGGTCCTGGGATGTGGACATCGCTAACATGCTGGAGGTAGGAGGGGTGCCGGGCCGTATCCACATCTCCCGGGCAACGCTGGACTGTCTGGGCGGGGTCTACGAGACGGAAGAGGGGCGTGGCCACGAGAGGAACGATTTTCTACGGAAACACAAAATCGACACGTTCCTGATTCGCCACACGCCCATGGAGGAGGCTCCTGCCAAGAAGGCTTGCCGGCCCAGTCGAGATGACACCCTTAATGCTGGCTGGAGTACTGAGCTGCCGTTTGGAAACATCATCGGAATGAACTGTATCCTGGCGACCTTCAGCAACTGCTCTCTGGCCCAGTTACCTAACCAGCTGGCGGCTCAGCGGACGGGGACGCGTGAAGTCAACAAGAGGATCCGCCGGGCCATCGAGGTCCGGAGCAGCGAACGCATGAGACAGGAACACATCACCACCTTCACACAGGAGTTCAAGGACACACACATCGAGGGCAAGttTTCCCAGATGCGTGATGAGATGTTCAAGTCAAACCTGGTCTGCTCCTTCATCATGCTCCTCTGCCTCATGGGTGCACAGACCCTCGTCCCTGCCGCAAGACTGTGTCCTATGCTGGTTCagtttggagtgtgtgtgtgtgtgtatgtgttgctgCTGGTGGTGGTCCTAGCTGAAGAGTTTAAACAGAGCCCTCTAGTGCTGCAGTTCCTGTGTTGCTGGATCAACGAGACCAAGACTGTCAGAACACTACTCACGCTCACCGCCATTATCATCAACTTCGGAGTGGCCTCATCTGATATActGTGGTGTGTAGAGTCTGAGATGGACCCTAACAACAGAAGCAGCTCCCAGCAGCACACCTGGTCCTGGCCTGTCAACATCTGTACACACCCTgagTTCCTGGTTTTCAGTGGGGTGGTTGCCATGGTGTCGTGTGCTGTGTTCTTCAGGCTGCACTGTCTACTGAAGCTAGCTGTGTTACTTCTGGCCATATCTGTCTACACGTACCTCATAGAAGTCAGTTACCACACACTGTTTATACGCCAGACCTCTGAAAACACCAGGTactgaataaacacacacactggtgaccgcctgggtggGAGGAAGGATGTGTGTGTCCTGCTCATGGTCATGTTTGTGGTGGCTGTAATTTACAACAGTAGACAGTTGGAGGCGACGGCACGGCTGGACTTCCTGTGGCGTCTGCAGgccagacaggaagtggaggacATGAAGGAGCTGAGGGAACATAATGAGTGTTTACTCTTCAACATTCTGCCTTCACACGTCGCACAGCACTTCCTAGAGAGAGACCGCcacaatgaggatctGTACTCCCAGTCCTATGAGCGTGTGGGGGTGTTGTTTGCGTCCATCCCGGGGTTTACAGACTACTATGAACAGAAAGAGTTGATCCATCAGGATGTGGAGTGTCTACGGCTTCTCAATGAGATCATAGCTGACTTCGACGAGTTATTAGATGAGACATATTTCCAGGACATTGAGAAAATCAAAACCATTGGCAGCTGTTACATGGCTGCTTCTGGCCTCTCCCCTGATCAACAGgagTGTGGTGATGAGTGGCGTCACCTCAGTGAGCTGGTGCTGTTTGCCCAGGAAATGCAGGAGACGCTCAAACGGATCAACACACACTCTGGAAACAGCTTTCAGCTCCGTgttggtgtagccCACGGTCCAGTGGTGGCTGGGGTGATAGGAGCCACTAAACCTCAGTATGACATCTGGGGAATGACCGTCAACCTGGCCAGCCGTATGGACAGCACCGGGGTCAATGGACGTATACAGGTCCCAGAGAGTACCAGTCATGTCCTGGCGGAGCGCGGCTTCGTTCGCCAGCTGAGGGGGGAGATCTACGTGAAAGGTGTGAGCGAGCGGCAGGGGAACGTCAAGACGTACTTCGTGAGGAGCCGCGAGTCGTGTTCCAGCTACATGGAGCGCAGTGTGACCCGCGGGGGTTTGGGCCTGGGAAGGAACACTCTGTCCGCTCTGGTCTTTACCCTGGTCCagaccaggaagagagagacacaacGAGAGGCTAACGGAGGGTTCCACCTGCTGGAGGTCTCATAGGCCTTGGGCTGTATATCATATCGGGAAAGAAAGGGACAGAATTCAGGTTATCCTCTCCTCGTTTGTTGGATCAAAACCTCTTTCTATGGTGGATTACCTCAAATGgagaactggggggtacaggctACAAGAGAGACACTAGAGGAGGGGAACGGAAGCTCCCCTTCTGGACAGCAGTACAGAGCAGAGTACTTtatagcagtggttcccaaactttctAGGTTACAGTACCGAACTGTATTCTGCTCTGCCCGAAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2266490 lncRNA upstream 12197 40855166 ~ 40855904 (+) True G1982567
TU2266483 lncRNA upstream 14202 40851568 ~ 40853899 (+) False G1982562
TU2266485 lncRNA upstream 14742 40845498 ~ 40853359 (+) False G1982562
TU2266482 lncRNA upstream 14742 40852489 ~ 40853359 (+) True G1982562
TU2266481 lncRNA upstream 21366 40844838 ~ 40846735 (+) True G1982561
TU2267234 lncRNA downstream 911 40892023 ~ 40892718 (+) True G1983146
TU2267235 lncRNA downstream 1687 40892799 ~ 40893131 (+) True G1983147
TU2267237 lncRNA downstream 2110 40893222 ~ 40893455 (+) True G1983149
TU2267239 lncRNA downstream 4388 40895500 ~ 40896302 (+) False G1983150
TU2267240 lncRNA downstream 4388 40895500 ~ 40896302 (+) True G1983150
XM_036962950.1 mRNA upstream 8047 40829046 ~ 40860054 (+) True dnajc27
XM_036963012.1 mRNA upstream 45275 40819696 ~ 40822826 (+) True pomca
XM_036962284.1 mRNA upstream 126362 40689188 ~ 40741739 (+) False snx9a
XM_036962282.1 mRNA upstream 126363 40689193 ~ 40741738 (+) False snx9a
XM_036962283.1 mRNA upstream 126364 40707890 ~ 40741737 (+) True snx9a
XM_036962870.1 mRNA downstream 406320 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA downstream 406881 41297993 ~ 41350749 (+) False LOC110504259
XM_036962969.1 mRNA downstream 656259 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 656365 41547477 ~ 41622795 (+) True LOC110505965
XM_036962230.1 mRNA downstream 745044 41636156 ~ 41663416 (+) False LOC110505964
TU2266230 other upstream 477694 40389658 ~ 40390407 (+) False G1982355
TU2266233 other upstream 477694 40389658 ~ 40390407 (+) False G1982355
TU2266234 other upstream 477832 40389658 ~ 40390269 (+) True G1982355
TU2265022 other upstream 1314609 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1773287 39036366 ~ 39094814 (+) True G1981068
TU2267392 other downstream 156439 41047551 ~ 41047902 (+) True G1983277
TU2267517 other downstream 324363 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 406594 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 423035 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 557290 41448402 ~ 41449340 (+) False G1983499

Expression Profile