RNA id: TU2266481


Basic Information

Item Value
RNA id TU2266481
length 278
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1982561
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40844838 ~ 40846735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaatctgatagtggtagatgtctagtctcctttatggttctaatctgatagtggtagtgtggtggtagatgtctagtctcctttatggctctaatctgatagtggtagtggggtggtagatatctcctttatgtctctaatctgatagtgttagtggggttgtagatgtctagcctcctttatggctctaatctgatagtggtagatgtctagcctcctttatggctctaatctgatagtggtagatgtctagtctcctttatggttcTAATCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2266471 lncRNA upstream 16998 40827641 ~ 40827840 (+) True G1982552
TU2266467 lncRNA upstream 27672 40816904 ~ 40817166 (+) True G1982548
TU2266465 lncRNA upstream 28709 40815854 ~ 40816129 (+) True G1982546
TU2266463 lncRNA upstream 30294 40814342 ~ 40814544 (+) True G1982544
TU2266459 lncRNA upstream 48296 40794788 ~ 40796542 (+) True G1982540
TU2266483 lncRNA downstream 4833 40851568 ~ 40853899 (+) False G1982562
TU2266482 lncRNA downstream 5754 40852489 ~ 40853359 (+) True G1982562
TU2266490 lncRNA downstream 8431 40855166 ~ 40855904 (+) True G1982567
TU2267234 lncRNA downstream 45288 40892023 ~ 40892718 (+) True G1983146
TU2267235 lncRNA downstream 46064 40892799 ~ 40893131 (+) True G1983147
XM_036963012.1 mRNA upstream 22012 40819696 ~ 40822826 (+) True pomca
XM_036962284.1 mRNA upstream 103099 40689188 ~ 40741739 (+) False snx9a
XM_036962282.1 mRNA upstream 103100 40689193 ~ 40741738 (+) False snx9a
XM_036962283.1 mRNA upstream 103101 40707890 ~ 40741737 (+) True snx9a
XM_036962740.1 mRNA upstream 265180 40578668 ~ 40579658 (+) True LOC118944272
XM_036963050.1 mRNA downstream 21366 40868101 ~ 40891112 (+) True si:ch211-132f19.7
XM_036962870.1 mRNA downstream 450697 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA downstream 451258 41297993 ~ 41350749 (+) False LOC110504259
XM_036962969.1 mRNA downstream 700636 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 700742 41547477 ~ 41622795 (+) True LOC110505965
TU2266230 other upstream 454431 40389658 ~ 40390407 (+) False G1982355
TU2266233 other upstream 454431 40389658 ~ 40390407 (+) False G1982355
TU2266234 other upstream 454569 40389658 ~ 40390269 (+) True G1982355
TU2265022 other upstream 1291346 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1750024 39036366 ~ 39094814 (+) True G1981068
TU2267392 other downstream 200816 41047551 ~ 41047902 (+) True G1983277
TU2267517 other downstream 368740 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 450971 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 467412 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 601667 41448402 ~ 41449340 (+) False G1983499

Expression Profile