RNA id: TU2266230



Basic Information


Item Value
RNA id TU2266230
length 493
RNA type TUCP
GC content 0.53
exon number 3
gene id G1982355
representative False

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40389658 ~ 40390407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggatgctggcccatgttgactctacaaggtgtcgaaagcgttccacagggatgctggcccatgttgactctacaaggtgtcgaaagcgttccacaggtatgctggtccatgttgactctacacggtgttgaaagtgttccacagggatgctggcccatgttgactctacaaggtgtcgaaagcgttccacagggatgctggtccatgttgactctacaaggtgtcgaaagcgttccacagggatgctggtccatgttgactctacaaggtgtcgaaagcgttccacagggatgctggcccatgttgactctacaaggtgtcgaaagcgttccacagggatgctggtccatgttgactctacaaggtgttgaaagcgttccacagggatgctggcccatgttgactctacaaggtgttgaaagcgttccacagggatgctggcccatgttgactctacaaggtgtcgaaagcgttccacctactaccataccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2266177 lncRNA upstream 54307 40334582 ~ 40335351 (+) True G1982304
TU2266147 lncRNA upstream 55911 40328577 ~ 40333747 (+) False G1982298
TU2266150 lncRNA upstream 56342 40328577 ~ 40333316 (+) True G1982298
TU2266224 lncRNA upstream 70357 40318221 ~ 40319301 (+) True G1982349
TU2266212 lncRNA upstream 122633 40266284 ~ 40267025 (+) True G1982337
TU2266171 lncRNA downstream 34200 40424607 ~ 40427679 (+) True LOC110505926
TU2266246 lncRNA downstream 39603 40430010 ~ 40430401 (+) True G1982366
TU2266251 lncRNA downstream 41605 40432012 ~ 40433321 (+) True G1982367
TU2266293 lncRNA downstream 135447 40525854 ~ 40526773 (+) True G1982403
TU2266301 lncRNA downstream 141728 40532135 ~ 40553006 (+) True G1982411
XM_021585396.2 mRNA upstream 25489 40356100 ~ 40364169 (+) True LOC110505920
XM_021585386.2 mRNA upstream 33700 40341646 ~ 40355958 (+) False LOC110505913
XM_021585387.2 mRNA upstream 33700 40341661 ~ 40355958 (+) False LOC110505913
XM_021585388.2 mRNA upstream 33700 40341702 ~ 40355958 (+) False LOC110505913
XM_021585385.2 mRNA upstream 33700 40341703 ~ 40355958 (+) False LOC110505913
XM_036962503.1 mRNA downstream 21722 40412129 ~ 40425708 (+) False LOC110505926
XM_036962859.1 mRNA downstream 50023 40440430 ~ 40454794 (+) False LOC110505917
XM_036962858.1 mRNA downstream 50027 40440434 ~ 40454794 (+) False LOC110505917
XM_036962857.1 mRNA downstream 50028 40440435 ~ 40454794 (+) True LOC110505917
XM_036962740.1 mRNA downstream 188261 40578668 ~ 40579658 (+) True LOC118944272
TU2265022 other upstream 836166 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1294844 39036366 ~ 39094814 (+) True G1981068
TU2264410 other upstream 1815298 38565878 ~ 38574360 (+) False LOC110505893
TU2264448 other upstream 1860553 38528607 ~ 38529105 (+) True G1980792
TU2263557 other upstream 2659754 37721134 ~ 37729904 (+) False G1980026
TU2267392 other downstream 657144 41047551 ~ 41047902 (+) True G1983277
TU2267517 other downstream 825068 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 907299 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 923740 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 1057995 41448402 ~ 41449340 (+) False G1983499

Expression Profile