RNA id: TU2267234


Basic Information

Item Value
RNA id TU2267234
length 462
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1983146
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40892023 ~ 40892718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACACCAACAGAAATACAGTGGATTATATACTGCTGTCTGACACCAACAGAAATACAGTGGATTATATACTGCTGTCTGGCACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATATACTGCTGTCTGGCACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATATACTGCTGTCTGACACCAACAGAAATACAGTGGATTATATACTGCTGTCTGACACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATACACTGCTGTCTGACACCAACAGAAATACAGTGGATTATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2266490 lncRNA upstream 36119 40855166 ~ 40855904 (+) True G1982567
TU2266483 lncRNA upstream 38124 40851568 ~ 40853899 (+) False G1982562
TU2266485 lncRNA upstream 38664 40845498 ~ 40853359 (+) False G1982562
TU2266482 lncRNA upstream 38664 40852489 ~ 40853359 (+) True G1982562
TU2266481 lncRNA upstream 45288 40844838 ~ 40846735 (+) True G1982561
TU2267235 lncRNA downstream 81 40892799 ~ 40893131 (+) True G1983147
TU2267237 lncRNA downstream 504 40893222 ~ 40893455 (+) True G1983149
TU2267239 lncRNA downstream 2782 40895500 ~ 40896302 (+) False G1983150
TU2267240 lncRNA downstream 2782 40895500 ~ 40896302 (+) True G1983150
TU2267243 lncRNA downstream 3786 40896504 ~ 40896719 (+) True G1983153
XM_036963050.1 mRNA upstream 911 40868101 ~ 40891112 (+) True si:ch211-132f19.7
XM_036962950.1 mRNA upstream 31969 40829046 ~ 40860054 (+) True dnajc27
XM_036963012.1 mRNA upstream 69197 40819696 ~ 40822826 (+) True pomca
XM_036962284.1 mRNA upstream 150284 40689188 ~ 40741739 (+) False snx9a
XM_036962282.1 mRNA upstream 150285 40689193 ~ 40741738 (+) False snx9a
XM_036962870.1 mRNA downstream 404714 41297432 ~ 41350749 (+) False LOC110504259
XM_036962871.1 mRNA downstream 405275 41297993 ~ 41350749 (+) False LOC110504259
XM_036962969.1 mRNA downstream 654653 41547371 ~ 41622795 (+) False LOC110505965
XM_036962970.1 mRNA downstream 654759 41547477 ~ 41622795 (+) True LOC110505965
XM_036962230.1 mRNA downstream 743438 41636156 ~ 41663416 (+) False LOC110505964
TU2266230 other upstream 501616 40389658 ~ 40390407 (+) False G1982355
TU2266233 other upstream 501616 40389658 ~ 40390407 (+) False G1982355
TU2266234 other upstream 501754 40389658 ~ 40390269 (+) True G1982355
TU2265022 other upstream 1338531 39544120 ~ 39553492 (+) False LOC110505902
TU2264736 other upstream 1797209 39036366 ~ 39094814 (+) True G1981068
TU2267392 other downstream 154833 41047551 ~ 41047902 (+) True G1983277
TU2267517 other downstream 322757 41215475 ~ 41216752 (+) True G1983387
TU2267528 other downstream 404988 41297706 ~ 41310454 (+) False LOC110504259
TU2267527 other downstream 421429 41314147 ~ 41350715 (+) True LOC110504259
TU2267650 other downstream 555684 41448402 ~ 41449340 (+) False G1983499

Expression Profile