RNA id: XM_021586576.2


Basic Information

Item Value
RNA id XM_021586576.2
length 2356
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110506741
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 36914774 ~ 36923482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCCCATCGTGAGGTTTTTGATTGATTTCCGGTGTCTGTGAAATTACTTAGCTAGCCAGTTGCGGTACACCTTTTTTGTTTTGACCAGTGGTGATTGCAACGTCTTTAAAACGCACATTTTGAAATTGTTCACATAAATGGGCAATTTTTGAACAGTGATGCCAGTGAATGGCACAGGCAACACTTGTTGTGGGACTGACCTAGACGGCGAAGTTGCACCTCCATGAGTAATGAACCTGAACCCATTCTGGAGCATGTCTACCAATACTGGTCGTAAGGTAAGGGAGCGATCTTCCTTTTCTGCACTGAAAGACAACTTCTGTCAAGTTCACCCAACACACAAGCGAGAAGAGAGACAAAAAAACAGGATCTTCAAAAGTTCCCAAAGAGACCCCCACACACTGAAAAGATCTGACGGTGAGGAACAGAGtggagagcagcagcagcagcagcaacaaagAGCCAGTCCAGCCCGTCCTAGCTTTGGGAAGAAGCAGCTTCCCTCTATCCCTAAGAATGCAGTTCCCGTCACCAAGCCGGCCTCTCCTGCCGCCACGGCCCAGTTGGCCAACGGAACACATGCCTCCTACGGTCCATTCTACCTGGAGTACTCGCTGCTGGCTGAGTTCACTCTAGTGATCAAGCAAAAACTGCCTGGAATCTATGTGCAGCCATCCTACAAATCAGCATTGATGTGGTTTGGGGTCATTTTCATCAGACATGGCTTGTACCAGGATGGAGTCTTCAAGTTCACTGTGTATATTCCAGATAACTATCCTGATGGTGAATGTCCTAGAGTGGTGTTTGATATCCCAGTCTTCCACCCACTTGTGGACCCTGTTTCAGGAGAGCTTGATGTCAGGAGAGCCTTCACCAAGTGGAGCTCTGTTACTCATGGCCTGTTTCTTCAGCTGGACAGTGACACAGCCATGCGTAATCACAACCACATCTGGCAAGTCCTGATGTATGCACGCACGGTGTTCTACAAGATCAACACTATGGAACCACTCAACCCAGAAGCTGCTGTGCTTTTTTTCAGGTACGACAAGGATGTGCAGTTGTTCAAAAGCAAGGTGGTAGACAGCGTCAAACTATGCAACAGTCACCTCTTCGACCAACCCAAGATGGACGATCCTTATGCAATAAGTTTCTCTTCATGGAACCCAGCGATCCACGACGAGGCGAAGGAACGGATGTTCACACATAAAAGACGGCCTGAGGATCACCAGAAGGGGCTGCAGGTGTCAGGACTGTCTTGGGTAAAGCCCGGATCCACACAACCCTTCAGCAAAGACGACAACCCTCCCCAGAGCTGAGCTAATCCTACAGTCCTAGTCAGCAGCCACTAGAGGAAGATGCAGAGCAGAATGCCACGCCACAGACTAGCTTCAGCAGCCGTTCAGTCGTGTGAATAGGAACTGAACAAGTTGAATGGACTTCATTTTACGTTGCAACACTTGCGCTCAGCTTTAAAAGCATTATAGGCATCTTGTGCTCAAACAGCTATAGAACAAAAATGTGTATATTATGTTAGTCAACCAGTTGTCATTGTTGATTTACTAAGTAACACCGGCTACAATGCAATCTGCGCTTTTTTCCCCTTTATTTTCCTCTCTGCTCTTTGCACATGCTTGGGTTTGGTCTATGAAGATAACCACTCAAAGCTGGTTGAGAATAAAAATCGGCATTAATTATAGGTATACTGTGTAACTGGACTATGGATTCATGACCGCTTGCTAAGGTGTGGTCAGGACAGTTAATTATTGGGACTTGGAATGTTTTTCAATGACTTCAGACTGAAGATGGACTCTAACCTTGGGTATTATTTTTTTCCCCAAACATATTTGACTGAAATTAAATTAAACCAACACTAcatttttggggtgggggggaatTTGCATCCTTTTGGATTATGGTTTGGTATCTTTTTTTTAATTTCTTTACTGTGTAAACTACAGGCGAGATGGGTAATATATATTGCAGGTATGGTTTTAATGAATATGCAACGTTAAATCACGGCTATCTTTACATTGCTTTTAAATAGTTTTGAATGTTCTATTTACCCTTATTGAGCTGATTAAAGGTTTGTCTAAATAAAAATGTGCTGTGGGAATGGCAGCCCTCAACAGACATTGTTTTGCTCAAGCTTTTGGCTACTTGGCACTATATTGCTGTGAAATGAAGTAAACACATGCTGTCTGGACTGTTGAATTTGGTAAAACAATGCATATGTGGACTTCTCATTTTAACGTTCCTATATGGAACCAAATCTTCAGTCAACAGTTCACGCTGTATAGGTAGTGAGTTTGGAAAGCTTTTCTTTGAAAGGAAATAAACATGACAATGCATACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2317620 lncRNA downstream 33966 36868520 ~ 36880808 (-) True G2026449
TU2317613 lncRNA downstream 61707 36849208 ~ 36853067 (-) True G2026442
TU2317541 lncRNA downstream 176055 36714156 ~ 36738719 (-) True G2026387
TU2317336 lncRNA downstream 249727 36664704 ~ 36665047 (-) True G2026216
TU2317332 lncRNA downstream 252305 36661814 ~ 36662469 (-) True G2026212
TU2317653 lncRNA upstream 1164 36924644 ~ 36924944 (-) True G2026474
TU2317685 lncRNA upstream 29231 36952711 ~ 36952985 (-) True G2026505
TU2317727 lncRNA upstream 72408 36995888 ~ 36996140 (-) True G2026547
TU2317915 lncRNA upstream 111253 37034733 ~ 37035334 (-) True G2026712
TU2317951 lncRNA upstream 159473 37082953 ~ 37085315 (-) True G2026744
XM_036963369.1 mRNA downstream 1114 36793286 ~ 36913660 (-) False LOC110506740
XM_036963371.1 mRNA downstream 1114 36793286 ~ 36913660 (-) False LOC110506740
XM_036963372.1 mRNA downstream 1114 36793286 ~ 36913660 (-) False LOC110506740
XM_036963373.1 mRNA downstream 1114 36793286 ~ 36913660 (-) False LOC110506740
XM_036963370.1 mRNA downstream 1186 36793286 ~ 36913588 (-) False LOC110506740
XM_021586585.2 mRNA upstream 381370 37304850 ~ 37308246 (-) False LOC110506744
XM_021586586.2 mRNA upstream 381370 37304850 ~ 37308246 (-) True LOC110506744
XR_005039853.1 mRNA upstream 875917 37799397 ~ 37800662 (-) False LOC118944515
XR_005039857.1 mRNA upstream 875917 37799397 ~ 37800662 (-) False LOC118944515
XR_005039855.1 mRNA upstream 875917 37799397 ~ 37800705 (-) False LOC118944515
TU2317552 other downstream 38671 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 38778 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 571340 36343156 ~ 36343434 (-) True G2025757
TU2316067 other downstream 1366017 35548260 ~ 35548757 (-) True LOC110506721
TU2316121 other downstream 1416971 35495787 ~ 35497803 (-) True G2025061
TU2318224 other upstream 496931 37420411 ~ 37421037 (-) True G2026993
TU2318287 other upstream 567372 37490852 ~ 37491416 (-) True G2027052
TU2319582 other upstream 1414373 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 1557122 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 2302883 39226363 ~ 39227059 (-) True G2028777

Expression Profile