RNA id: XR_005039797.1


Basic Information

Item Value
RNA id XR_005039797.1
length 1420
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC110506839
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41984638 ~ 41986095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGAACTGCTCTGTCTGTTAACCAAGCTAGTTCTGAGACAGAACTGCTCTGTCTGTTAACCAGGCTAGTTCTGAGACAGAACTGCTCTGTCTGTTAACCAGGCTGCGATAACAATACTGAGAGGTTTAACCAGGCTAGTTCTGAGTGATCCAGCTGATCCGAATGTGAAGAAGCAGATTAACCTTTACGTTCTCCGTGGAGGACATTGATATCTTGGTTGCCTTGGTGACATACTAGTTAGTAGTTGTATATATTTCTGCTCCATCAACTCAAAAGGGTTGTCAGTCAAAGTCAGACTGTCTCCTCTATTGTGTGTGAATACAGTGCATATCAAACTTATTTTTAGGGCAGAATGTCTGTTATTTTATTTCCTTACTCTTGTCTGAAGTCTGTCTATTTCTAATGGTTGCCCTGAGAAACGAGGGGAATTAATTAGTCAGCGATTGATTAAAGAAAACTGGACAAGTTCTACATTTTAAGAGACTGATTTTTGACCGTACAGGTAACTAACTGTCTTACTAACAGTCAAAGGGAAACTAACATGCCTGCTATATTGTTTAGCTGAGAGAACATTCTGTATAACAAAGATTGGATCATTTTCCAGTGCTTGCAATTGGCTTTCATGTAGAGAATGGGATTCAGAACAACAGTATCCCTTTATATCTCAGCAACTATATGAGAAGATGCTCAATCTTCTTGTGCTGTAATTTAACCAGTTTTCCTGTGGTCTTTGACTTCAAGGTTGTCTTAACAGAGACATCAACTGTTAACTCATGTCAGCGTCATTCTGAAGACTAGAATTAACATTGTATTCATAGACATACACAAACCACAACACACAAAACTGACTGCCAGATAGTGACTCGGATCACTATATCAATACATTTTATATCTAGGGTATTTATAATGGTTCACACAGTGAATTTttccaaataaaaaaaactaagaaCAAAAACAGTAACAATGTATTGTGCAAAAATAATAATTCAGTTGAATTCTCCAAAACTCCTCAGAATCCTGATGTAGAAAATCCTCATGAAGATTGTCCATCATTCCAATAAACTCTGCTTGTCTGTGCATGCTACCTTATTGGTTCTAATCCTGTAGGTAATagtttaaaaatgaataaaatagaaaggctATTTTAAAAGATGCATATTTAAAAAGCTAACTGTGGATGGTATGGGGAAGGCTGGTGCAAGGTCGTCGTCTTGCCTCCACTGGCTGTGCTGGAAGGAAGGCGTTGGGATCGCTTTCCTCTTTCTTTTTGCAAGCTTCATGACTGTTCTTAAATCTTTTGTTTTAAGTGCAATATACTTCTCTATCTATCTTTAGGAACATAGAACTTCAGCAGATTTATTGTCAAAGGGGGAAAGTGTGGTGATCATCAATAAAACATGTATTGAAGAATACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323055 lncRNA downstream 5695 41978494 ~ 41978943 (-) True G2030984
TU2323051 lncRNA downstream 7002 41974255 ~ 41977636 (-) True G2030982
TU2323050 lncRNA downstream 7321 41974255 ~ 41977317 (-) False G2030982
TU2323049 lncRNA downstream 7581 41974255 ~ 41977057 (-) False G2030982
TU2322989 lncRNA downstream 63199 41903314 ~ 41921439 (-) True G2030945
TU2323078 lncRNA upstream 45687 42031782 ~ 42032359 (-) True G2031004
TU2323091 lncRNA upstream 74783 42060878 ~ 42061560 (-) True G2031017
TU2323107 lncRNA upstream 108538 42094633 ~ 42094991 (-) True G2031029
TU2323075 lncRNA upstream 111053 42097148 ~ 42099490 (-) True G2031002
TU2323164 lncRNA upstream 233410 42219505 ~ 42220377 (-) True G2031083
XR_005039889.1 mRNA downstream 68107 41906824 ~ 41916531 (-) True LOC118936287
XM_036964385.1 mRNA downstream 68714 41906824 ~ 41915924 (-) False LOC118936287
XR_005039888.1 mRNA downstream 68725 41906824 ~ 41915913 (-) False LOC118936287
LOC118944569 mRNA downstream 73634 41910803 ~ 41911004 (-) True LOC118944569
XR_005039827.1 mRNA downstream 89343 41891935 ~ 41895295 (-) True LOC110506831
XM_036963906.1 mRNA upstream 190 41986285 ~ 42027498 (-) False LOC110506148
XM_036963904.1 mRNA upstream 190 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA upstream 190 41986285 ~ 42056568 (-) True LOC110506148
XM_036963914.1 mRNA upstream 81637 42067732 ~ 42070472 (-) True LOC110506147
XM_036963913.1 mRNA upstream 132326 42118421 ~ 42138004 (-) True LOC118944459
TU2322609 other downstream 416725 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 521448 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 772786 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1077445 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 1085617 40898470 ~ 40899021 (-) True G2030162
TU2323116 other upstream 161265 42147360 ~ 42148871 (-) True LOC110506841
TU2323163 other upstream 230344 42216439 ~ 42217465 (-) True LOC118944568
TU2323351 other upstream 357187 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 357187 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 357187 42343282 ~ 42346725 (-) True G2031225

Expression Profile