RNA id: TU2323352


Basic Information

Item Value
RNA id TU2323352
length 2014
RNA type TUCP
GC content 0.47
exon number 3
gene id G2031225
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42343282 ~ 42346725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatagagttgtatggttttaactttgcaatcatctatttttgtttgacatacattgtAACGTGAAAGATCTGAGTCTCAGTGTCACTCTGTTGCAGTGGAATGACCCGTGTGTCGGAGATCCATTTTGCCCTCTGATAGACCAGGGGAATGGTCGGCATATTGTTTACACCTATGCAATCCTCTCAAATCTACGTAAGTACACTGCCTCGAGGCCGTGGGTAGGGTTTGATTTGGGAATCAGGGCCAGAGTAAGGGGGACAGCCAACTTCCCAGTCCAAACATGATCTTCTTAGATGGGATCCATCGTTGCCAAGGCCAGCAGTTCTCCCATATGCCTACAGGGGGCgatctctgcttctctcctgaGGGGCGCTTTGCACTGCATCGTCACCTCCCTTCTATTAAAAAGTGTGGGGGGAGGCTAATAAAAATGGTCCACACCAACCTGTCATGTCACTAAGCTCCTAGACACACTGGGGGTGCTGTATTTAGACTCACCCAGCAAAGTACACACTCCAGGAAGACGGACTTTGGAGCCAGTGGGATATATACCAAATACTCCACCCACCCTGCACTTTCAGTAGGTACACTGCAGCTGGGTGTTCTGCAATGCTatgacagtacacacacacacgtctcatgAGCTGCTTTCCCCAGATGACAGCGGCTTTATTACACATTTCCATGTAAAGCTGTgtgtccctcctccccctgtactgTATTGGGGCTTAGCAGCATGGGCCATATGGAGTTGGAACAGCCACACATGCCTTCCCCTGCCCTTCTCCCATTCCCTTTCTCTcagtctctatccctctctccctttctctcagtctctatccctctctccctttctctcagtctctatccctctctccctttctctcagtctctattcatctctccctttccgtctcccttcatctctccctttccgtctcccttcatctctccctctgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcagctctcccttcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccatctccattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctattcagctctcccttcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctattcagctctcccttcatctctccctttgtctctattcatctctccctttccgtctctattcatctctctctttccgtctatattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttccatctctattcatctctccctttctgtctctattcatctctccctttctgtctattcagctctcccttcatctctccctttgtctctattcatctctccctttccgtctctattcatctctccctttccgtctctattcatctctccctttctgtctctattcatctctcccctTGTCtgtattcatctctccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323303 lncRNA downstream 54972 42286656 ~ 42288310 (-) True G2031201
TU2323164 lncRNA downstream 122905 42219505 ~ 42220377 (-) True G2031083
TU2323075 lncRNA downstream 243792 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 248291 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 281722 42060878 ~ 42061560 (-) True G2031017
TU2323393 lncRNA upstream 23977 42370702 ~ 42372438 (-) True G2031260
TU2323336 lncRNA upstream 30396 42377121 ~ 42383608 (-) False G2031224
TU2323345 lncRNA upstream 30396 42377121 ~ 42383608 (-) False G2031224
TU2323347 lncRNA upstream 30396 42377121 ~ 42383608 (-) False G2031224
TU2323342 lncRNA upstream 34203 42380928 ~ 42383608 (-) False G2031224
XM_036964584.1 mRNA downstream 125780 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 194416 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 205278 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 272810 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 286714 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 115856 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 115856 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 165555 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 177856 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 177858 42524583 ~ 42526465 (-) True LOC110526670
TU2323163 other downstream 125817 42216439 ~ 42217465 (-) True LOC118944568
TU2323116 other downstream 194411 42147360 ~ 42148871 (-) True LOC110506841
TU2322609 other downstream 775369 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 880092 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 1131430 41211477 ~ 41211852 (-) True G2030291
TU2323389 other upstream 21529 42368254 ~ 42369909 (-) True G2031259
TU2323433 other upstream 112532 42459257 ~ 42461315 (-) True G2031286
TU2323493 other upstream 211072 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 269519 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 837911 43184636 ~ 43185724 (-) True G2031974

Expression Profile