RNA id: XM_021586700.2



Basic Information


Item Value
RNA id XM_021586700.2
length 730
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110506841
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42147360 ~ 42148871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCGGACACGGCGGTACACAGATAAAAGGTGTTTGGATTGCGGTAACTGGAGTATTAGAACGGGACCTTTTTGGAGACGAAATATATCTTATACTGTGCGCAATCTCATTAGGACCATGGAGAGCTCCAGGCTATGGACCAGAGCGGTGGTTTGCGCGGTGTTGCTGTCCATCGTTCTTAGTGCTGAAATTGACTACTCGGATTCCGAACTGGACTTCGACACAAGAAGTGTGAGAGACTTCTACCCCAAAGATCCGAATTTGACCAACGAAAAGCAACTGCTTGGAGCACTACATGACGTTCTTAAAAAGCTGCAGACCAAGAGACTTCCATTCTGGGAAAAGAAATTCGGCCAAGTCCCTACGTGCGACGTTGGAGAGCAGTGCGCAGTGAGAAAGGGCGCGAGAATCGGCAAAATGTGCGACTGTCCTCGCGGAGCTTTCTGCAACTCTTACCTGCTCAAGTGCTTGTGAATTGAATTGGTCTGAATGTAAGTTAGAAGTTGATGGCAAACTAAAACTGTTACATCAGAACGATATGTGATATAGGAATATTGTTATGATACTACAATATACGATTATCCGGAGAGTGACAGGTTGCATTCTGAGAGATTGTCCCCAAAAAGGCTTATTTTGAACTTatgaaatattttattttcaactGGATGTTTCTGTAACCAAAAATGAGTTGTGCTATGAATAAACAGCGCTCTATCTTGTTTTGTAAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2323075 lncRNA downstream 48274 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 52773 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 86204 42060878 ~ 42061560 (-) True G2031017
TU2323078 lncRNA downstream 115405 42031782 ~ 42032359 (-) True G2031004
TU2323055 lncRNA downstream 168821 41978494 ~ 41978943 (-) True G2030984
TU2323164 lncRNA upstream 70639 42219505 ~ 42220377 (-) True G2031083
TU2323303 lncRNA upstream 137790 42286656 ~ 42288310 (-) True G2031201
TU2323346 lncRNA upstream 153187 42302053 ~ 42383608 (-) False G2031224
TU2323393 lncRNA upstream 221836 42370702 ~ 42372438 (-) True G2031260
TU2323336 lncRNA upstream 228255 42377121 ~ 42383608 (-) False G2031224
XM_036963913.1 mRNA downstream 9760 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 77292 42067732 ~ 42070472 (-) True LOC110506147
XM_036963904.1 mRNA downstream 91196 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA downstream 91196 41986285 ~ 42056568 (-) True LOC110506148
XM_036963906.1 mRNA downstream 120266 41986285 ~ 42027498 (-) False LOC110506148
XM_036964584.1 mRNA upstream 66035 42214901 ~ 42217502 (-) False LOC118944568
XM_036963237.1 mRNA upstream 313715 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 313715 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 363414 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 375715 42524581 ~ 42526465 (-) False LOC110526670
TU2322609 other downstream 579851 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 684574 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 935912 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1240571 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 1248743 40898470 ~ 40899021 (-) True G2030162
TU2323163 other upstream 67573 42216439 ~ 42217465 (-) True LOC118944568
TU2323351 other upstream 194416 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 194416 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 194416 42343282 ~ 42346725 (-) True G2031225
TU2323389 other upstream 219388 42368254 ~ 42369909 (-) True G2031259

Expression Profile