RNA id: TU2323393


Basic Information

Item Value
RNA id TU2323393
length 497
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2031260
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42370702 ~ 42372438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagatggttggagggagggaggcttcaaactcagtggctctttgcttgacatcatgggaaaaccaaaataaatcagccaagacctcagaaaaaacattgtagacctccaccagtctggttcatccttggaagtaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaacatgcagccatcatactgctcaggaaggagacacgttctgtctcctagagatgaaagtactttggtgcgaaaattgcaaattaatcccagaacaacagcaaaggaccttgtgaagatgctggcggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctaaatcAATATAacttgaaaggctgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagacggtttgcaactgcatatggggacaaagatcctacattttagagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323303 lncRNA downstream 82392 42286656 ~ 42288310 (-) True G2031201
TU2323164 lncRNA downstream 150325 42219505 ~ 42220377 (-) True G2031083
TU2323075 lncRNA downstream 271212 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 275711 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 309142 42060878 ~ 42061560 (-) True G2031017
TU2323336 lncRNA upstream 4683 42377121 ~ 42383608 (-) False G2031224
TU2323345 lncRNA upstream 4683 42377121 ~ 42383608 (-) False G2031224
TU2323347 lncRNA upstream 4683 42377121 ~ 42383608 (-) False G2031224
TU2323342 lncRNA upstream 8490 42380928 ~ 42383608 (-) False G2031224
TU2323344 lncRNA upstream 8490 42380928 ~ 42383608 (-) True G2031224
XM_036964584.1 mRNA downstream 153200 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 221836 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 232698 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 300230 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 314134 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 90143 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 90143 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 139842 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 152143 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 152145 42524583 ~ 42526465 (-) True LOC110526670
TU2323389 other downstream 793 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 23977 42343282 ~ 42346725 (-) False G2031225
TU2323352 other downstream 23977 42343282 ~ 42346725 (-) False G2031225
TU2323354 other downstream 23977 42343282 ~ 42346725 (-) True G2031225
TU2323163 other downstream 153237 42216439 ~ 42217465 (-) True LOC118944568
TU2323433 other upstream 86819 42459257 ~ 42461315 (-) True G2031286
TU2323493 other upstream 185359 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 243806 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 812198 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 819260 43191698 ~ 43197828 (-) True LOC110506858

Expression Profile