RNA id: TU2323346


Basic Information

Item Value
RNA id TU2323346
length 2571
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2031224
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42302053 ~ 42383608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTAAAACATATGTCACAAACCAAAAAAGATTTGTGGAGTAGTAAAATGTTATTAAAAAAAGTAATAATTCAAATGACATATTACAAAAAACTATTAACACCAGTGGACAACAAACATTCTTTAAATAATAGAACTGTACATATATATTTTGTAAAGGTAACCCCCCCTAAAAAGTAAGATACCTAACAAAAACAAAGAAGACATTTTGAAATCCTTCAACAGAAGTGAACAACGATGACATCAACAACATTAGCTCATTATTGGATCATAAAAGACTAGAATAACAAAAAAGAACAAACGGAAATAGTGATATAGCGGGGGAGAAAGTCACAGTAGTACAGAAACATAAGTTAAAATTCAAAGAGGAcagaggttaaaggtcagagaagtAAGGCAGTATAGTAGGTAAAAGACTTTGCACAGGAAGTGGAAGGAGGACTGGGGTCAGCCACTTCCTGGCTACCCATGTACGTAGAACGGCCGTGATTCAACTTATCAACGAGACATTGAATCAATTGTTAAAGAGCTGGTATAAAACAACTACCAAACTCAACAGTGAGTTCTTGAGTTAATTCGCTGAAACAGGTTTAGTGcttggctggaacaaaagcccAGTCACATCGTAGTTGCCCTTCAGGACGAGGGTGGGTGACTACTGATAGACTCAGGATGATCATagagtcgtgttcattagggcacacaacagaaaacagaaatgAATTATTGACGAGTCCAGGTAGGCCCTCAATGTTTTagtctgttttgttctgttccGTGGCTCAGGAATACGACCCATCAGAATAGATCCCGTCCCACCCGAGACTATGGGTTACACTGAACCACTCACCTTCACATTGTATAACTGACCGTTTTCTATCTGGTAAAGCCAAATCCCCAACTGGACCACCGACTATGTCATGGTTTAAGTTCTTTAAACATGTTCTAATGAGACCAGAAAGGACGTCAGTGTCCAAGCAACAGAAGCCATTACTcacacaccatgctccaactactCTCCGACAGTGACTAAAAAACACACATTAAATTACAACACTGCAGTTACTGTACCAACTACAAAACAGTCGGGTGGATGGCGAGAAAACTAATGCAAGATGACAAATCAAATTGTCTGTAGTTGTGCCTGTTTGGGAAATGCCCATATATGGACACAGATACATCCAATCCCTTCCTCTTACTTGTCAATCAAAAAGCACAGGAgctatctcctccctcccttatgTATTGGCTGTGGACATTGAACACATGTAACATTGCTCTTGCTCAgtattacacaaacagtacaaaATCTCGTGAAAGGGAATCGTAATCTAtattgtatataaaaaaaaagcatTTGCATAACATTAACGTGTTTACCTGTTCAACAGGTTGCATTGATTACGAGCATCATTTGACCGTGCCATAAAACACACATGCATAGCCAGTGAGAGGACAAACTAGACAGAGCTTGTGGTGGGTcctccctgtccatgtaatctcaTCCATTgcgatctaaaaggcaaaactgatcccaAGTCAtttctcctactctgagacgctgcATGAATATATATGGGCCGTGATAATACTGCAATAACTGTCATTCACTTTCAAAGTGAATATGCATGCATACTACAAAAGAAAAATGGCCATTGGCAGAACTTGAGCATATAGGTTCCAATGCTAGTTCTGTCATTCAACATATTGGAAATCTCTTAGAAAAGGCTTAGCATGACTTGTGTTCAATAGTCGTGCTGAATCTCTTTGAAACACTGCAAATCATTAGACACGTTATCTTTCTGTGCAAATGAAACAATCCACCACCTGAAGTTGTATCTGCATTTCTATGGCTTCAGCAAGTACACCTTTAAACATGATCTTTGGGGTTTCTGTCACATAAAAACAGATCAAATGTAGCAGTAAAAATATCACATTGCCATACATTTAAATCTATAGAATGGGAAAAGCTTTGTGCAAAAATGTCACACAAGGCAATGTTAAATGTGTTCCATGTCTGCAGTGTTACTGTTACAGGGTGATGTCAATCGTTACATCATTTTGACCTTTAAACTTTCAACCATCTTAGGGGTCGTTGCTGTAGCGCCGAGTGGGTTTATGGGAGGGTCTGGCTACTGTATGTAAGTCAATCAGAACACTTTCGAGGAAGTAAACCATCCACAGTAAACTACTGGCTGTAGCTTCCCTACGGTGTCCCAAGGTTCATAACTCACAAATACTTCAACACGAGCTGCATTACAAGTCAGTACAAAACATGTAATAAAGAGTACTATTAATGGATATAGATGTATAGTAGTAGATAAACAAGTAAAAAATAAACTTCCTCTTTAATGGTCTAGGTTGTCCCAGCTCTCTGAGATCCCTGTGTGGTGTGAGAGTTCTGCATATCCATATCCAAAGGCAGGGAAAAACCACAGTCGGCCTGCGGTTCAGTCCATTTGAGTCCAAAAGACGGTGGTGGGGGAGTTGCATCCACTCTGATTGAATCATTGTGACATGAatgaatatatatacacacacatatatatatacatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323303 lncRNA downstream 13743 42286656 ~ 42288310 (-) True G2031201
TU2323164 lncRNA downstream 81676 42219505 ~ 42220377 (-) True G2031083
TU2323075 lncRNA downstream 202563 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 207062 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 240493 42060878 ~ 42061560 (-) True G2031017
TU2323415 lncRNA upstream 14181 42397789 ~ 42398950 (-) False G2031271
TU2323417 lncRNA upstream 14181 42397789 ~ 42399014 (-) True G2031271
TU2323420 lncRNA upstream 17122 42400730 ~ 42401075 (-) True G2031273
TU2323426 lncRNA upstream 30680 42414288 ~ 42414597 (-) True G2031279
TU2323427 lncRNA upstream 32938 42416546 ~ 42416840 (-) True G2031280
XM_036964584.1 mRNA downstream 84551 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 153187 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 164049 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 231581 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 245485 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 78973 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 78973 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 128672 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 140973 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 140975 42524583 ~ 42526465 (-) True LOC110526670
TU2323163 other downstream 84588 42216439 ~ 42217465 (-) True LOC118944568
TU2323116 other downstream 153182 42147360 ~ 42148871 (-) True LOC110506841
TU2322609 other downstream 734140 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 838863 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 1090201 41211477 ~ 41211852 (-) True G2030291
TU2323433 other upstream 75649 42459257 ~ 42461315 (-) True G2031286
TU2323493 other upstream 174189 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 232636 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 801028 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 808090 43191698 ~ 43197828 (-) True LOC110506858

Expression Profile