RNA id: TU2323116



Basic Information


Item Value
RNA id TU2323116
length 1139
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC110506841
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42147360 ~ 42148871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGACTTCGGACACGGCGGTACACAGATAAAAGGTGTTTGGATTGCGGTAACTGGAGTATTAGAACGGGACCTTTTTGGAGACGAAATATATCTTATACTGTGCGCAATCTCATTAGGACCATGGAGAGCTCCAGGCTATGGACCAGAGCGGTGGTTTGCGCGGTGTTGCTGTCCATCGTTCTTAGTGCTGAAATTGACTACTCGGATTCCGAACTGGACTTCGACACAAGAAGTGTGAGAGACTTCTACCCCAAAGATCCGAATTTGACCAACGAAAAGCAACTGCTTGGAGCACTACATGACGTTCTTAAAAAGCTGCAGACCAAGAGACTTCCATTCTGGGAAAAGAAATTCGGCCAAGTCCCTACGTGCGACGTTGGAGAGCAGTGCGCAGTGAGAAAGGGCGCGAGAATCGGCAAAATGTGCGACTGTCCTCGCGGAGCTTTCTGCAACTCTTACCTGCTCAAGTGCTTGTGAATTGAATTGGTCTGAATGTAAGTTAGAAGTTGATGGCAAACTAAAACTGTTACATCAGAACGATATGTGATATAGGAATATTGTTATGATACTACAATATACGATTATCCGGAGAGTGACAGGTTGCATTCTGAGAGATTGTCCCCAAAAAGGCTTATTTTGAACTTatgaaatattttattttcaactGGATGTTTCTGTAACCAAAAATGAGTTGTGCTATGAATAAACAGCGCTCTATCTTGTTTTGTAAAGCAGTCTGAGTGGTCTCTCTTTGCTCCAATAATTTCATGATCCACATGCATACAGATGATGCGCAATGCTGTGTGCGATAATGTTATGGGTTATTTCCTACAAACTCACGAAGTAAAAAATACCTACCGATAATATTAGTCATGAAGTACATGGATTCATGAGGGCTGAGTCTTGTCTGGACTGAGAATGAAATAGCATTTTTAGGCCAAATGGAGATATGGTCGGACAGAAACAAAACAGTAGTGTATGTACATTAGTTTAATCTAATACATAGTATTTACTTAGAGCAGTAGACATTTACACGACCTTCATTAAGATGAATAAAAGTTATATAATCACAATAGTTCAACTTGTAGAGAATATTTTATGGTTTTCAAGTGAATAAAAAGTGTGTTATTTAACTATT

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009267 cellular response to starvation biological_process
GO:0032099 negative regulation of appetite biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0008343 adult feeding behavior biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2323075 lncRNA downstream 47870 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 52369 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 85800 42060878 ~ 42061560 (-) True G2031017
TU2323078 lncRNA downstream 115001 42031782 ~ 42032359 (-) True G2031004
TU2323055 lncRNA downstream 168417 41978494 ~ 41978943 (-) True G2030984
TU2323164 lncRNA upstream 70634 42219505 ~ 42220377 (-) True G2031083
TU2323303 lncRNA upstream 137785 42286656 ~ 42288310 (-) True G2031201
TU2323346 lncRNA upstream 153182 42302053 ~ 42383608 (-) False G2031224
TU2323393 lncRNA upstream 221831 42370702 ~ 42372438 (-) True G2031260
TU2323336 lncRNA upstream 228250 42377121 ~ 42383608 (-) False G2031224
XM_036963913.1 mRNA downstream 9356 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 76888 42067732 ~ 42070472 (-) True LOC110506147
XM_036963904.1 mRNA downstream 90792 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA downstream 90792 41986285 ~ 42056568 (-) True LOC110506148
XM_036963906.1 mRNA downstream 119862 41986285 ~ 42027498 (-) False LOC110506148
XM_036964584.1 mRNA upstream 66030 42214901 ~ 42217502 (-) False LOC118944568
XM_036963237.1 mRNA upstream 313710 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 313710 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 363409 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 375710 42524581 ~ 42526465 (-) False LOC110526670
TU2322609 other downstream 579447 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 684170 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 935508 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1240167 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 1248339 40898470 ~ 40899021 (-) True G2030162
TU2323163 other upstream 67568 42216439 ~ 42217465 (-) True LOC118944568
TU2323351 other upstream 194411 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 194411 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 194411 42343282 ~ 42346725 (-) True G2031225
TU2323389 other upstream 219383 42368254 ~ 42369909 (-) True G2031259

Expression Profile