RNA id: TCONS_00005141


Basic Information

Item Value
RNA id TCONS_00005141
length 1335
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_002775
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24682307 ~ 24689725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGCTTAATCTGGAAGAGGAAGGAACATCACGTTCTACTATTACCAGGTCATGCCACAGCTGGTGTTTATCTTGATTTGTCATGCTCTCACATTACTTCAAGCTTCAGCAGGGGAAGAATGCCAAAGTTATGAAATGTCAAAGCTGAAGGAAGAGATTCGCATGCTGAATAATAAATTGTTGATAGGGGAATGGAAAGTTATGCATCTGCGTACTCATCGTAAATTCAGGCTGGTTCCCAATCTGGAATTACAGGAAAATAAGCCGTCTGAAAACAACACTGAACCTTCACCAACCTTACCAAGCACTGGAGGATCTTTATTAGTTCACGATAAAGACTGTTCAGAGTTATATGACAGACTCAAACCAGTCAGTGGATTCTACAGGATCAAACCCAAACCATTACTCGAACCATTCCTTGTATACTGTGACATGGATGATGGGGGGGCCTGGACTGTGATTCAAAAAAGAATCAATGGGAAAGTTGATTTTGACAGAAAGTGGGAAGATTATAAAAATGGATTTGGAAATTTTCAGTCAAGTAAAGATGAATTCTGGCTTGGGAACGATCATATTCATGTCCTTCTCAGTGATGGTGACAGTGTGATGAAAATTGATCTGACAGACTGGAAAGGAGGGAAATCATATGCCATGTATGACAACTTCAAAGTGTCAGATGAAAAAGATAAATACAGGCTGTACTATGGGATGTACAGTGGTCAAGCAGGAGATGCCTTGTCCGGAGGAGCCAATATGGTGGAGCAGTGGTCAGCCTCCCATAATGGCATGCAATTCAGCACCAGGGACCAAGATCATGATCGGTACCTGCAGGGAAGCTGTGCTGCAGAGAACAAGGGGGGCTGGTGGTATAACAGgtgTCATGCTGCCAATCTTAATGGGAGATTTTACAGAGGTGGAGAGTACAAGGCCAAATATGACAATGGTATTGTTTGGAGCACCTGGAAAGGACTGTGGTACTCCCTCAGACACACAGTCATGAAGGTCCGGCCCAGCTCCCACATGGACAGCGTGGGTAGTGGAGGAGGGCCCACTGAATAGCGAGGTTGCTAAGCATCTTGTTATACACATTTGTGAATTATACTGTGTTAACTATAAGATTTACTGTGGTTTATTAACTTTTCAACCACATGACTGTCGAGCATAGAAAGAATCTTGGAGGGATGAAGGAAGAAAGTAATCTTGGTAGATTTGATGAATCCacctgttatttttaaaataatcataaataatataaCTTTGCATGCAGCCATATAATAGCACTTGTAGCATACAATATGCATATTacattaaaacagcatttttacatgtgaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000079566

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006047 lncRNA downstream 59462 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005132 lncRNA downstream 240908 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006046 lncRNA downstream 637695 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005145 lncRNA upstream 62959 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 143971 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 144649 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005760 lncRNA upstream 639857 25329582 ~ 25334232 (-) False XLOC_002787
TCONS_00006049 lncRNA upstream 639857 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005138 mRNA downstream 27060 24649685 ~ 24659840 (-) False XLOC_002774
TCONS_00005139 mRNA downstream 27078 24655035 ~ 24659822 (-) True XLOC_002774
TCONS_00005137 mRNA downstream 27555 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005136 mRNA downstream 27555 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005134 mRNA downstream 38669 24641229 ~ 24648231 (-) False XLOC_002773
TCONS_00005142 mRNA upstream 20242 24709967 ~ 24724388 (-) False XLOC_002776
TCONS_00005143 mRNA upstream 32855 24722580 ~ 24753715 (-) False XLOC_002776
TCONS_00005144 mRNA upstream 35534 24725259 ~ 24759616 (-) False XLOC_002776
TCONS_00005146 mRNA upstream 72491 24762216 ~ 24765988 (-) True XLOC_002777
TCONS_00005147 mRNA upstream 88564 24778289 ~ 24784446 (-) True XLOC_002778
TCONS_00005133 other downstream 231168 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 303519 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 307124 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 1855471 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1934552 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005164 other upstream 804448 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1442744 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 1506559 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 2053871 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 2316546 27006271 ~ 27009124 (-) False XLOC_002814

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11304660_11306789.mRNA True 1253 mRNA 0.41 8 CI01000304 11304560 ~ 11306871 (-)