RNA id: TCONS_00005136


Basic Information

Item Value
RNA id TCONS_00005136
length 4359
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_002774
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24648903 ~ 24659840 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACAAAAAATCATTTGACATCGTCTTGGACGAAATCAGAAAGtgtgttttgACAGATCAACGGATTAAAGCTATCGAGCAGGTTCATGGGTATTTCTCCAGTGAACAGGTCATAGACATTTTGAAGTACTTCTCCTGGGCAGAGCCCCAAATAAAAGCAGTCAAAGCCTTGCAACATAAAATGGTTGCAATTCCAACGACAAAGGTTGCAAACATCCTTAATTGCTTCACATTTTCAAAGGACAGAATTATAGTATTGGAACTCATAGCTTTAAATATTTCTGATGCCCAAAACTACCGTCCTGTGGAAGATGCATTCCGTATTCATCTCTCTGAGAAGAAACGTGCAAGAAGAATCCTAGAACAGgtgTGTAAGGTGGGATGTAAAGCTCCAGTTGCAATGATTTCATCCTGCGGGATGATCCCAGGGAACCCTTATCCTAAGGGCAAACCCAGCCAGGTTACAGGAACATTCCCTGGAATTCCTGCCAAAAAGGAGGGAGAGGATGTAAACCTCGATGGAAAGGGTATTGCTTTACGCATCATTGGAGGATCAAGCAAACcgTCCCCCTCATCATATAATCCACACAGACCTGTGCCATACCCGATCCCGCCATGCCGCCCCCATGCAACCATCGCTCCAAGTGCATACAACAACGCAGGTCTGGTGTCAGTGGGTGGGGTCATCACTGCCAGTGTGCCACCCCCACCCTACCGAGCCACTCCCAATTTGGCAGgttacAGCCGACCTGCCAGTCAAAACCCAACAGCCAACATCTCTGGCACACCTGCTATCTCTCCTCGTGGCTCCACTCCATCAACACCAGTCACCTCCCAGCCTCAGCCAACTACACCAATCACTCCAGTTTTCCCTGGCATGGTCCCATCCCAGAACCCTGTGACCCCTTCCCCTACTCCTGCCCCGTCTCCCTCAGTTATCAAAGGACCTCCAATTGGCTCTCCCCAAGTTGCCTCTAACTCCAGTGGCCACACTACACCAGTTCCCTCTCCATTTCCCAGTATGCCCCCTTCTGGTAGAAACACCCCTTCTGTCATCAAAAGTCATACACCATCTGGAACACCATGTAGTACACCTGGGCCAAGTACAGGCATCCCACCTTCTCCGTTCCACAATGCGCCTCGCTCAGAAACACCTTCTGGTGGCATCACACCTACTCCCAGGGCAACTGGTGACTCCATGAATACTCATGGAGCAATGGGTTTACCCTCAAAAAAGGGCTACCCACCTTCCTCTGACTCCCAGTCAGCACTTTTGTACCCTGGCACTCCCTCTACGCAGTCACATTCAGTTATTCGTAGTTACACACCTTCAGGGATGTCTGCTCTCGCCCCTGGACAATCTGTTCCCAGCATGCAGGGTGTTGGTAGCCCTAAGCCCTCTCCTGGACTCACCTCCCAGGCCGCCCTTGGTAGCCCTGCAGGAGCTTATTTTAATGAGCAGCACACCAGCTCCATGGCCCGGCATGGCGGAGGTAGTGGAAGCAACAGTCCTGTCCCTTCTGCATTTAAAGGCCCCTCACGCTCTGGCACCCCTTCTCTTAGCTCTCTAGTAATGCCTAACTCTGCTGTCCTTGCCCGACCTGTTGGTATGGCCCATGGTTCTCCCTCACCACAGTCTAATTTACCTGGCACTGCTGGCATAGCAGGTCTCCATAGCCTGCCCTCAGCTCTAGGCTCTCAGTCTGGAAGTAGCCCTGCTCCACATTTTGCAGCAATGTCTCCTTTCCCTGGCGCCCAGTCTTCCATTTCCACCCCCTCTACTCCTACTCCTCCTGTCTCATCTGTATATACTGGCCTGGCTCACTCTAGTGCTCCCTCTCACACCCCTTTTGGCCTTGGATTGACAACAGCTCCATCTGTGTTCCCGGGTCTTCCTCCTGGACCAAACCCTGCCTTCCCAGGATTTGGAGGCTCAGGGTCCCCTGCTGCAGGAAGTCCAGTGCTGTCATCTTTAATGGGCATTCCAGGAGCCTCTTCCTCAGTGGCCACTGTCGCACCTCTCCAGGCAGCTGTCGCAGCAGCTGCCGCAGCAGGAGTCCCTTCCTCTTCTCCTGTGCTTCCAGGATTTGCCTCTGCGTTTAGCTCTAACTTCAACCCTGCTCTGGTTGGACAGCCTGgGCTCACTGGAAGTCTTCAGCCCCCTGGAGGAGCAGGTTTCCCAGGATTGCTGTCTTTTCCTCCAGGGATGCCCGGCTTCTCCAGCGCTGCGTCTCCTGCTGCCCTCTCTGGTCTACACAACTCTGCCATGCAGTCTGCTCTTTTGCAGGCTCACTCAGCATCAGCACTGGACAGTTACGCTCAGCCAAATGGATTCCCAAACTACCCAGCAGCAGCTGGCTCAAGCTTCCCACTACAACCAGGCCTGCACCCTTCACTGGGTTGGCAGTAATTTGCATATCGAAAGAAATGCAACCTAaggatgtttgtgtgtgaaacaaTTTCCTCTACAAGAGATTCAAACCGCCAGACATGTGGTTTGGTGCTATGAATTAGAAGAAAATCATTTTGATTTGACTATTGAGGGCTGGACTGCTTGTCACATgtatttgaatgaatgaaataaataatactctttagttttttgtttttagaagtaGTTAGATCTTAACATTAAGCATCATGACAATGTTGAAAAAtgaatattgaaataatttttttaacatacaCCAGTAGATGAACTGTGAAAGTGTGGGTCTGCAAAGTTtactatactgttttttttttaatcatgaaaGTAGTGAGTTAACTGACTTTTTCTTTAAACGTCTGTCAAATACTGTACATACCCTTCGAAAATGGGTAAATTAGATGTTTGCTCTTTGTACTGTAGCTGTtccagtttttatttttccctgttaCCTTGCAAACTTCTCTATAGGAACTGATAGAGCTGCTTTGCCAACTCCAAAGTGACTTTAGTGTAACCGATATTACACTGTTGTGCAATTTTGCTGATATTAACCCTTTtactaccccaccaagaaaaaaaaattggattgcatttttTAACTTCTAATGTCACTATTCAACACAtcctataattttttaaatatcaacctcctccaaatggtagatatgttggtttatggtgAAAGTACCGGAATGAATacatatactgtgaaaaatctaaaaaaatgaagtgtataactttatttaaaaacataatcaaaataaaacattttgaatactaaatcatctttatattTTGAGGATTTAACATGCAATAAAACCTATGTCAAGTGTAGtgtttgtaagattttttttgtaaaccaacaatgttgtgtagtgtaaaccattatttaaatgaatttaacagtcattatttaaaacagtcaaaacatggtcaaccatttggtagagcaggcagttaaaggggtTAAGGTCAGAACCATGAATTTTGCATGTATACAATGTTTAGATCCAGCACCCAGAGTCTGCGGTACTCTCATTTGTTtccattatattttataaaatgtacaaaagaatatggtAGGTTTATGGTAGTCTAGTGCGTTTTAACATCATAATGaaataaaactcttttttttccctAGACTTTCTTTGTGGTTTCCCTTTACTCTGAATTGTGTGGTTAGCAGTGGATGTCACGTGTCGGTAAAGGACTTTCCAGAATGACTAAAAAAAAGCAACTTGGTAAACTTTGTAAAAAAAGACAAAGTTTGGTCCTGCTGACATATAATGCGTTCCTTTCTTGTACAGATATTTTACATGTCTTCAAATatcatgtattttacatttatgatGGTTAAAGTCTTGAATATTGAGTTTGCTGGTGAACTTGTTCAGGAAACTAAATTAGTTATTACACATTATTCTGACATCGATTGATCCAGCCCATGCATTTGATCACATAACAGGAGGGAAATCGTGATAGTATTTGTTTCCACGTCACAAGTCATAAGACTCCTGTGATTACTAGTTTCCACTTGACCTTTGTTTTACTTTATGCAAGACTTAGGAGTTCCTGTATGCGTGCCATGAGTAGATACAGTATAggtcataaaaatgtattaaatattacataataatggGTCAATTTACATTTAacctaacaaaaataaataaattaataaatgcaacaaaaaaacttatttacCTGATTTACCcatcagatttattttttgtcatttgaatcttttattggttttaatttatagttaaacaatgcaataaatatttttttcttttataacgtttgtttgtgtgtatatgtatgtgtatatgtgtaggtATATatcgttttttgttttgttttttccttctcTTTCAATGACATGGTAGAGAAGGGGTAATGTACCGATTTAATCTATAAATG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-111003-1 Orthologous to human PROSER1 (proline and serine rich 1).

Ensembl:

ensembl_id ENSDART00000128902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006047 lncRNA downstream 21465 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005132 lncRNA downstream 202911 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006046 lncRNA downstream 599698 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005145 lncRNA upstream 93339 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 174351 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 175029 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005760 lncRNA upstream 670237 25329582 ~ 25334232 (-) False XLOC_002787
TCONS_00006049 lncRNA upstream 670237 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005134 mRNA downstream 672 24641229 ~ 24648231 (-) False XLOC_002773
TCONS_00005135 mRNA downstream 675 24641485 ~ 24648228 (-) True XLOC_002773
TCONS_00005131 mRNA downstream 232432 24394023 ~ 24416471 (-) True XLOC_002769
TCONS_00005127 mRNA downstream 257187 24372729 ~ 24391716 (-) False XLOC_002767
TCONS_00005128 mRNA downstream 257187 24374504 ~ 24391716 (-) False XLOC_002767
TCONS_00005140 mRNA upstream 22962 24682307 ~ 24689280 (-) False XLOC_002775
TCONS_00005141 mRNA upstream 27555 24686900 ~ 24689725 (-) True XLOC_002775
TCONS_00005142 mRNA upstream 50622 24709967 ~ 24724388 (-) False XLOC_002776
TCONS_00005143 mRNA upstream 63235 24722580 ~ 24753715 (-) False XLOC_002776
TCONS_00005144 mRNA upstream 65914 24725259 ~ 24759616 (-) False XLOC_002776
TCONS_00005133 other downstream 193171 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 265522 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 269127 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 1817474 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1896555 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005164 other upstream 834828 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1473124 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 1536939 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 2084251 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 2346926 27006271 ~ 27009124 (-) False XLOC_002814

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11282245_11288087.mRNA True 2543 mRNA 0.54 12 CI01000304 11282141 ~ 11288087 (-)
bowfin (Amia calva) AMCG00016067 True 3234 mRNA 0.53 12 CM030122.1 4532324 ~ 4553950 (+)