RNA id: TCONS_00005127


Basic Information

Item Value
RNA id TCONS_00005127
length 3804
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_002767
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24371921 ~ 24391716 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAGTAAGTGCCGGTGACAGCAGGAGGACAGAGAGGGGAAGAGAGAGCAAAGGCATCAAAGCGTACACCACTCTGCACTAAAAGGCTACAGAACTTGTTTGCCTGTCTCTCAaagACTGTGAGGTTTGATTCCACCAGACTCAGTCGACCACCCTTTTCCTCTACTGCTTGCTTTCCTACTCTTTGCAGCCATGGCACCCACTCTGGCCACAGCGTTTGCCCGTCGTTGGTGGATGGCAGTAACAGCCATCATTGAAAATCTGCTGTTCTCTGCCGTGCTGCTGGGCTGGGGTTCCTTACTCATCATGCTGAAGTCTGAGGGCTTTTATTCATACCTCTGCACAGATCCAGGTAAGAGCTCAATGGCAAACTTCTCCTTACCAGCTGTGCCTTCATCGCTAGCAAATGATCCAGATTATGAATATGACGAGTTCCAGCCCTCCAGTCGCGATGATGGGGTTGAAGTGGTCCCTCTAAAGCATCCAGAGGACCACCTGAGGATGAACGGCTGGCTCATCTGTAAAGAACAGGATGAGATGTTGAATCTGGCCTTCACTGTGGGCTCTTTTCTCCTCAGCGCCATCACACTCCCACTCGGGATTGTCATGGACAAATACGGACCACGCAAACTCCGCCTGCTCGGAAGTGCCTGTTTTGCCCTCTCGTGCCTTATGATTGCTTATGGAGCCAGCAACCCAAATGAACTCTCCGTCCTGATCTTCATTGCTCTGACCTTTAATGGCTTTGGAGGAATGTGTATGACCTTCACTTCACTtacgTTGCCCAATATGTTTGGTGACCTGCGAGCGACCTTTATCGCACTCATGATCGGCTCATACGCTTCCTCTGCCGTCACCTTTCCAGGGGTTAAGGTGATCTATGATCTGGGTGTAACCTTCATCATGATTCTGGTGGTCTGGGCTGGTTGTGCAGGCCTCGTCTTCATCAACTGCTTCTTCAACTGGCCCCTGGAGCCTTTCCCTGGACCCGAGGACATGGACTACACCGTcaagatcaagttcagctggctGGGATTTGACCATAAGATTACAGGAAAGCAGTTTTATAAGCAGGTGACGACAGTGGGCAAGCGTCTTAGCGTGGATAACACTCAGAAACAGAAAGAGCTTGCCAAAGAAGGTCACAAACTCTGCTTGTCCACTATGGACCTGGAACTGCAGTGTGAGCCCAAGGAGGAAACTCAGTCGTTCATGAAGAGTATTTTCAGTCCTCTCTTCATGTTGAGTCTGGTGACCATGTGTGTAACTCAGCTGCGTCTCATCTTCTACATGGGGGCCATGAATAACATCTTGGAGTCGCTCAGCGGAGGAGATCTGAACACAGTGAGTCTCTACACCTCCATTTTCGGCGTGATGCAACTCTTGTGCTTGATGACGACGCCGGTCATCGGTCAGATCATGGACTGGAAGCTGAAAGAATGCGATGATGGAGAAACCAATGAAAAACAGCCCAACAAGGATGAGCCCCAGCCAAAACGCAGAGACAGACAGATTCAGAAAGTGACCAACGCCACACGAGCCTTCATCTTCACCAACATTCTCCTCGTCGGCTTTGGCATCACATGCTTGATTCCCAACCTCCCGCTTcagATGCTCTCGTTTGTCCTTCACACCATCGTCAGAGGCTTCATCCACTCTGCCATCGGTGGACTTTACGCTGCTGTGTACCCATCATCTCAGTTCGGCAGTCTGACTGGAATGCAGTCTCTGGTTAGTGCTTTATTCGCTCTGCTGCAACAGCCTTTGTTCATGGCCATGATGGGACCCCTGAAAGGAGACCCACTCTGGGTGAACGTTGGTCTGCTGGTTGTCAGTATGCTGGGATTTCTGTTGCCGCTCTACTTGCTCTACTTCAGGAAAACTCTGCACAAAAAGAGGAAGGAGAAAGAAAATAATGCTAAAATCTACCTGAAAATCAACGGCAGTGACGTTCCGGAGGCATTTGTGTAAAGAAAGCAGATAAAGGGAAAAACTAAGGCGTGAGAGTATCTCATATACATACAGCTGCACAAAAAACACATGATTAAAGACTACTGTGCCTCTTTCTTAATGATTAAATCGATGGATTTAAAAAGAGAAATGAGAGACAGAAAGCAACATGGGAAATTACTTTCAGAAGTTTCTTGTAAAGGCCCTGATTTACCTAAACTGAAATTAAAGAAAGATCGTTTGTGATGTCATTTCAGACCAAACCAGGCTTCATTTTAAGGAGTTTGAAGAGTGCTTGTAATCACCGTTTAACCATCATTGGTCTGTGTTGATGATGCTATAAGCGGGTGTAGCTTTGAAGCTCCGCCTTATTTAAAGTGGaatcttcttttgtttatttcCTCTGTTCATCTGAGGTCAGACGTCTGCTAGTAAACATATAAATAGTGTAAAACTGCTTTGCAAAAAAGCAACATTGGCATTGTTTTCATGTTGAATTCTGTCTATAAACAATTGTAtaaagtgctatttaaataaacGTGACTTGACTGAATGGAAAAGCTCGTGCAACACCACATCACTATTTTCCGAATACTTTCTTTGCTCTTTTCTCACCTCTGTAactttgttgtgtgtttgtttcgtTACAAAGCACACGTCATCCTAAAGCTTCTGTCGGCCACTTGAGGATGTTAATGTTATTCTACTGCTCTTGTATTTCAAACTTCTTTTTACTTCAAAATGAGCTTGGCTTTTAGTATATCGGGGCCTTAATTCACAaacttttacagatttttttatttattttactttttgcaaTTACACACGATGAAGTTTCAACTGTCTCTCAATAATCTAAACCAGTACTGCATATGAATATATGATTTTTATATGCATGCTTCTGAAGCCCGTCTAGACAGCAAAGTTGTAAAGATGCCAGATGGCTGTTTTACCTACAAAGAAAATCTCAACAAGGGATTTCAATGTAAACCAATCCCCccaccaaaaatattaataaaaatgcagCTACACAAAGGgcctttttttataaaacattatttattaataaaaaaagatctgACCACTTTTTATCATATGGAAGCCACAATTTATGCATATCtgtttgtatatatgtttttatgctaCATGTGCAAGAGATGCATAGATAAAAGTGGCTGAACTGCTCACGATCTGCAGCGAGTGCCTGATCTGGCAACAACAGCACTTTTAACACGTCCCATAAAACCCCTCATGACCCATAATTCCCTTTTTCTGTCCTTATCACTAGCATTCTGTGATTTTTCAGAGTGTGTTGAGAGTCATTTATGTGTCATTGATCGATGGATCAAGTTATTATGAACCTCCAAAGTAAAATATCATAAAGAAAGCACAACCTAACCCAGAAATGTGCCTTTTTTGTGCAGTTTACAGTGCAGTTAAAGCTGGTGATAGCTGATGTGAGTATGGAGCCACAGATACTGTGGAAGTGTGTTGGTGTTAtgtgtaatgtatttattatttctttaaaatctaACAGATTATATGGATAATGCGGCCTTATTTGCAAATGTTGTTATATTAACTTACATCTCAGTGTTGCAGTggctgtttgcttgtttgttagtttttttcatGTATTGTTCTATATGGCATTACGGTTAAAGATTATATTCaataaaatttgtaattattgttcattttgtcatttatttatttacagttattttgGAATGCAGTGATTTTATTTAATACTCAGAATTTGTATTCTTATACAATctataaatgtgtgttttaatgaaaaaaactattttagactTGTGGTTTTggatttataataaaacattatataaaaca

Function

GO:

id name namespace
GO:0015804 neutral amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015175 neutral amino acid transmembrane transporter activity molecular_function
GO:0015179 L-amino acid transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-6 Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in neutral amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; myotome; retinal inner nuclear layer; and yolk syncytial layer. Orthologous to human SLC43A2 (solute carrier family 43 member 2).

Ensembl:

ensembl_id ENSDART00000141332

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006046 lncRNA downstream 323524 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005117 lncRNA downstream 323534 24046207 ~ 24049195 (-) True XLOC_002764
TCONS_00005116 lncRNA downstream 323606 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00006045 lncRNA downstream 822847 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006044 lncRNA downstream 852486 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00005132 lncRNA upstream 47904 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006047 lncRNA upstream 222257 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005145 lncRNA upstream 360968 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 441980 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 442658 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005122 mRNA downstream 1417 24323751 ~ 24371312 (-) False XLOC_002766
TCONS_00005124 mRNA downstream 9954 24325600 ~ 24362775 (-) True XLOC_002766
TCONS_00005123 mRNA downstream 29222 24325600 ~ 24343507 (-) False XLOC_002766
TCONS_00005121 mRNA downstream 53203 24304534 ~ 24319526 (-) True XLOC_002765
TCONS_00005120 mRNA downstream 54191 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005131 mRNA upstream 2307 24394023 ~ 24416471 (-) True XLOC_002769
TCONS_00005134 mRNA upstream 249513 24641229 ~ 24648231 (-) False XLOC_002773
TCONS_00005135 mRNA upstream 249769 24641485 ~ 24648228 (-) True XLOC_002773
TCONS_00005137 mRNA upstream 257187 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005136 mRNA upstream 257187 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005104 other downstream 1541300 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1620381 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 2100826 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 2465624 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 2799323 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005133 other upstream 63900 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 1102457 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1740753 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 1804568 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 2351880 26743596 ~ 26744131 (-) True XLOC_002804

Expression Profile

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