RNA id: TCONS_00005124


Basic Information

Item Value
RNA id TCONS_00005124
length 810
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_002766
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24323751 ~ 24371312 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATTAAGGAACATCGAGTGATCCTACCGATTTCTGTGGAGGAGTATCAAGTCGGGCAGCTATATTCAGTAGCGGAGGCCAGTAAGAACGAGACGGGTGGAGGAGAAGGTGTGGAAGTGCTAAAGAACGAACCCTATGAGAAGGATGGAGAGAAGGGCCAGTACACACACAAAATCTACCACCTGCAGAGTAAAGTCCCATCTTTTGTACGAATGCTTGCACCAGCGTCAGCACTGAACATTCATGAGAAAGCTTGGAACGCCTACCCATACTGCCGcacagTAATAACTAATGAGTACATGAAAGAAAACTTCCTCATCAAGATCGAGACATGGCACAAACCTGACATGGGCCAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTAGATGTGGTTTACATAGACATTGCAGACAGAAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCTAGTAAGTATAAGTCTGTAAAGACTGGAAGAGGGCCGCTCGGTCCAGATTGGAAGAGAGAGCTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTTATTCAAAAGcaagaGAAGCGCTTGTTCACTAACTTCCATCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGACGACATCCGCAGAATGGAGGAAGAGACCAGGAAGGAATTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGAATGGTGGCTCTTGAAGACTGA

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-51 Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

Ensembl:

ensembl_id ENSDART00000182104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006046 lncRNA downstream 276395 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005117 lncRNA downstream 276405 24046207 ~ 24049195 (-) True XLOC_002764
TCONS_00005116 lncRNA downstream 276477 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00006045 lncRNA downstream 775718 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006044 lncRNA downstream 805357 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00005132 lncRNA upstream 76845 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006047 lncRNA upstream 251198 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005145 lncRNA upstream 389909 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 470921 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 471599 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005121 mRNA downstream 6074 24304534 ~ 24319526 (-) True XLOC_002765
TCONS_00005120 mRNA downstream 7062 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005119 mRNA downstream 7062 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005118 mRNA downstream 8326 24302433 ~ 24317274 (-) False XLOC_002765
TCONS_00005115 mRNA downstream 967243 23220501 ~ 23358357 (-) True XLOC_002760
TCONS_00005126 mRNA upstream 9146 24371921 ~ 24391030 (-) False XLOC_002767
TCONS_00005125 mRNA upstream 9146 24371921 ~ 24391030 (-) False XLOC_002767
TCONS_00005127 mRNA upstream 9954 24372729 ~ 24391716 (-) False XLOC_002767
TCONS_00005128 mRNA upstream 11729 24374504 ~ 24391716 (-) False XLOC_002767
TCONS_00005131 mRNA upstream 31248 24394023 ~ 24416471 (-) True XLOC_002769
TCONS_00005104 other downstream 1494171 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1573252 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 2053697 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 2418495 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 2752194 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005129 other upstream 14642 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 20491 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 92841 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 1131398 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1769694 26132469 ~ 26141081 (-) False XLOC_002799

Expression Profile

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