RNA id: TCONS_00005131


Basic Information

Item Value
RNA id TCONS_00005131
length 3723
RNA type mRNA
GC content 0.45
exon number 19
gene id XLOC_002769
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24394023 ~ 24416471 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTCCAACAGGGAAGGGCTTTCCATGAATTTAATGGGTGTGTAAAAGGCTGTTATCATGGCTCATGACTGGTCATCTTCATTGCTCTGCTGTCATATTATAATTCAGGGCTTCGCAGATCTCTGCTGCAGAATTATTTGAGAACCCTAGCTGGGCAGTTGTGTTCTTTCGGAAACTATGCTTTCTTTCCTGGAGTTTTTGGGAAGCTTGAGCATCTTCTGTGCTGTATTAGCCCAGGCGTCTGGAATGGAAAGAATCTTCTATATTGCGATTCGAGAGGAAGAGTGGGATTATGCACCAAGTGGACAGAATCTGATCAATGGGAAGCGTATTGAAGAGGATGAGCAGGCATCAGTATTTCTGCAACGTGGGGCTCGGCGGATTGGCAGTGTGTATAAAAAGGCAATTTACAGGCAGTACACAGATTCTTCTTACTCTCAGGAGGTCCCCAAACCCCCCTGGCTGGGTTACCTGGGGCCCATCATGAGGGCTGAGGAGCAGGATGTTATCATAGTGCACATGAAGAACTTTGGCTCCAGACGTTACTCCATGCATCCACATGGCGTCTTCTATGCCAAAGACTCAGAAGGTGCGTTGTATCCAGACGGAACCTCAGACAGTCTGAAGCAAGATGACGGTGTTCCTCCAGGGGGAAACTACACCTACACCTGGATTGTGAAAGCAGAATCTGCCCCTCAGAAGGATGACCCAAACTGCCTGACATGGGCCTACCATTCACACGTCAGTGCTTCACAGGACATCTCCTCTGGCCTTATTGGAGCTCTTCTCACCTGCAAGAAAGGAACCCTGTGTGAGACGTCCACTTCCGATCAGCACCACGCTCATCGTGAGGATGTGGACCAGGATCTCATCCTCATGTTCAGTGTGGTGGATGAGAACATCAGCTGGTATCTAAAAGAGAACATCCAGAGCTTCTGCTCCGACCCAGATGGTGTGGATCCTGCAAGTGAAGACTTCCAAGAATCCAATTTGATGCACGCCATTAATGGATATGTGTATGGAAACCTACCGGGGATTGAGTTTTGTCAAAACCGCACAGTTGCTCTGCATCTCTTTGGCATGGGCAATGAGATCGACATTCACTCAGTTTATTTCCACGGGCACACACTTCTGGACCGCGGGCACCGTGTGGATGTCATGAGTCTGTTTTCTGCCACTTTTGCCACTGCAAACATGATTCCTGCCACAATAGGGACGTGGCTGTTAAACTGCCAGGTCAATGATCATCTGCAAGCTGGTATGCAGGCACTGTTCAATGTGTCGTCCTGCAGTGATGAGGCGAGCTCCACGGCTCCTCTCAGTGGGAAGATCAGGAAGTATTTCATTGCTGCTGAGAAGGTTCAGTGGGATTACGGACCATCAGGGATGAACCAAGTGACCAAGGAGTCTCTAATCGATCCTGGAAGCTTTTCAGAGGTTTTCTTTGGGACCAATAATAGCCGAATTGGTGGAAAGTACTGGAAGGTGATATACAGAGAATATACAGATAAGACTTTCACCTTAAAGAGAAAGCAAACCAGTGCTCAGACTCATCTAGGCATTCTGGGTCCAGTACTGAGGGCAGAGGTTGGAGATACACTTCAGGTGATGTTCATGaataaagctgacagaaactacaGTATCCAGCCTCATGGACTCCAGTACGACAAACCCTTCGAGGGAGTATTTTATCAAGATGGTATAAAGAGAAAAGGATATGAAGTTCAGCCAGGTGAAACGTTCACCTACATGTGGAAGTTGAGGGAAGGACCGTCTGAAAGTGACCCCCCCTGTATTTCCTACCTGTACTTTTCCTCCAGTGATGCAGTCAGAGACACTAACTCTGGCCTCGCAGGCCCCCTGCTGGTGTGTAAGAAAGATGCGCTGACATCAAGTGGCACTCAGAAAGAGGTGGATCATGAGTTTTTCCTGCTTTTTACTGTGTTCAATGAAAACCTCAGCTGGTACTTGGATCAGAACATTGAAACCTTTGGCACCAATGAGTCAGACCCAGAAAATCTGGACTTTCAGGAGAGCAATAAAATGCATGCTGTGAATGGCTTCATGTATGGGAACCTACCTGGCCTTGAGATGAATAAGGGGTCCAGGGTCAGATGGCATCTTTTAGGACTTGGCACAGAGATGGACATTCATGGCATTTACTTCCAAGGCAACACCTTCGAGAAACAGGGCACAACACATGACACTCTGAGCCTGTTTCCACACACTGCAGTCACTGTTTTCATGCAACCAGATGTCAGTGGTGTATTTGAGCTGAGCTGTCTAGTGTGGGATCACTATGATAGTGGGATGAGACAACTGTATGAAGTGACAGGACCAAGATATGAAGAGCCCTCAGTCTCACCATCTGAGACAGTGGAGTATTTCATCAGTGCTGAAGAGCTGGAGTGGGACTATTCGCCTGATCGCACATGGGAACTGCAGAACTTCAACACAACGGAGGATGAAAGTCCTGGCAGTCTATTTGTAGGAACAGGAGGAAACAAACTGGGCTCCAAGTATAAGAAAGTAGTTTATCGAGAATACACCGACGCCACCTTCAGGACAAGAATAGAAAGAGAACCTCATGAGACACACTTGGAGATTTTAGGGCCTATGATCAGAGCTGAAGTTGGCCAGGTTTTGTTGATCACGTTCATGAATAAAGCTAGTCATGCTTACTCGATACAAGCACATGGAGTCAGATCTTTTACTTCAAAACCTGAGGCCGTCATGCCAGGTAATATGACTCAGTACCAGTGGATCATTCCGGAGAAATCCGGTCCAGGCGTGTCTGATCCAAACTGCATTGCTTTTGCCTACTGCTCAGCTGTGGACTTTGTTAAGGATACAGCCAGTGGTCTGATTGGGCCATTAATGATCTGCAGGAAGGGAACACTGAACCAGGATAGACAGAGAACTGATGTGGACAGAGAATTTGCTCTCCTTTTCATGGTGTTTGACGAGAACAAATCCTGGTACCTGGAAGAAAACATTGAATCCTACTACAACAGCTCAGAACCTCTTCTAAGAGATGACGAGTTTCAGAAAAGCAACAAGATGTATGGGATAAATGGAAAAGTCTATGCAAATCTTCGGGGACTGGAAATGGTGGTAGGGGAAAGAGTGGTCTGGTACTTGTTTGGGATGGGTAATGAAGCAGATATTCACACCGTCCATTTTCACGCTGAGACCTTCACCTACAAGACAGATCATACTCACCGTACTGATGTGTATGACCTGATTCCGGGGTCATTTCAGACATTAGAGATGGTGGCAGAGGTCAATGGAACATGGCTTCTGCACTGTCATGTCTCACACCACATCCTTGGTGGAATGGACACCACTTTTATCATCAAACCTCGATCAGGTGGTGACTCTGTGAGGAGagatttaaacatcatttgtgtgcTGATCACAACATTCATGTTCAAACTCATATATTGATCCTTCTGTAGACATATATTGTACTTAAATACTCTTAACAAATATATTTAAGCAGTGTTCAAAAGTTTAGGGCCAGTAGGATTGTCTCCCCTCTTATGATCACCAAGGTTtatgaaaaatacagtaaaacctgTATTGTGGAATATGattaatttcaatttaaaagttttttgtttgtttgttttgtttttagtgtcagttctgcttaatatttttgtggaaaccattTTTCGCCAGGATTGtttaatgaagtaaaaaaaaagcaattgttTGAA

Function

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006826 iron ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004322 ferroxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-388 Predicted to enable ferroxidase activity. Predicted to be involved in iron ion homeostasis and iron ion transport. Predicted to act upstream of or within copper ion transport. Predicted to be active in plasma membrane. Orthologous to human HEPHL1 (hephaestin like 1).

Ensembl:

ensembl_id ENSDART00000135985

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006046 lncRNA downstream 344818 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005117 lncRNA downstream 344828 24046207 ~ 24049195 (-) True XLOC_002764
TCONS_00005116 lncRNA downstream 344900 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00006045 lncRNA downstream 844141 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006044 lncRNA downstream 873780 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00005132 lncRNA upstream 23149 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006047 lncRNA upstream 197502 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005145 lncRNA upstream 336213 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00005759 lncRNA upstream 417225 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00006048 lncRNA upstream 417903 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005127 mRNA downstream 2307 24372729 ~ 24391716 (-) False XLOC_002767
TCONS_00005128 mRNA downstream 2307 24374504 ~ 24391716 (-) False XLOC_002767
TCONS_00005126 mRNA downstream 2993 24371921 ~ 24391030 (-) False XLOC_002767
TCONS_00005125 mRNA downstream 2993 24371921 ~ 24391030 (-) False XLOC_002767
TCONS_00005122 mRNA downstream 22711 24323751 ~ 24371312 (-) False XLOC_002766
TCONS_00005134 mRNA upstream 224758 24641229 ~ 24648231 (-) False XLOC_002773
TCONS_00005135 mRNA upstream 225014 24641485 ~ 24648228 (-) True XLOC_002773
TCONS_00005137 mRNA upstream 232432 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005136 mRNA upstream 232432 24648903 ~ 24659345 (-) False XLOC_002774
TCONS_00005138 mRNA upstream 233214 24649685 ~ 24659840 (-) False XLOC_002774
TCONS_00005130 other downstream 10642 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 14247 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 1562594 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 1641675 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 2122120 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005133 other upstream 39145 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 1077702 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1715998 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 1779813 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 2327125 26743596 ~ 26744131 (-) True XLOC_002804

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11124801_11135838.mRNA True 5334 mRNA 0.40 19 CI01000304 11124157 ~ 11137342 (-)