RNA id: TU2318045


Basic Information

Item Value
RNA id TU2318045
length 2815
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2026823
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 37240343 ~ 37243472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAACACTGTCTTGGTTTATTTACTGCCTTCCTAAAGCTTCAGACAGACAAGCTGAGCTGTGAAACAGAGAGCACATAGTTGTTCAACTCAACAATACAGCCAGTCTACAATCTCAACCTCAGTCAACATACAAAAAGATTAAGCAAGAGAACAACATTTTGGCAACTGTTAACATTTGAAATTGGAAAAACTTCCagaagtaaaaaaaacaaacatttttaacaCCATATATCAGTTCTACTTCCTGTTGATATAGATAGATGTATAAAGAAATTGATAACACTTCATTTGAACTAAACACCATGATCTCTTCATAACCTTCATAAAAATGTCCTGACCATGTTATAAAGCTTCATACCACGAGTCATAACTTGTCAACACATGCCATAAAGCTTCAGTTATCACAATGACACAAGCTATGAAGTGTTATGACATGTTTACAACATTGTTGTAAAGGCATTATGGTGGCCAGGTCAAAGAAAGCAGCTGCCCAACTGGTAGCCGGCGTTGGTTTTATTTCGCACCCAGGTTTTctaagcaaaaaataaataaaataagaataACTTTTCTATaattcccaagtattcccacgcataatagagagacaatTAATTgtgtacaaatgtaagcaaggtttgaaatgattacgttttagtcaaatattatatctgtttgggcttcttggggtaaatttgcagtctacaaatcatttgtaattcgtcccgtggctgaatctagttgatgatccctgaaataaagtgttaccactaAATAAAAAAGAAGATTGCTCTGCTTGGCTTTGACAACCATCACATTTCCACCCATAGCTTCTCTTTCCTGGTTGGTTTTGTCAGAAGCCGTGGATCTGAGTTTCTGGAGCAGCGATACAGGGAAAGTGGTGTTCTACACGTTTTAAGACTAATTAAAAGCCATTGAACAGCTGCAATTATGAAGACAGAGTGGCAGTTAGGATGGGGATCCTTCTATCAGCCACACATTATAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGTCTGGGCTGCCTTTCAGCCCTACACAAACTGCCTGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGTCTGGGCTGCCTTTCAGCCCTACACAAACTGCCTGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGccctacagtagctagctgtctGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTTAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGTCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACACAAACTGTCTGCCTGGGCTGCCTTTCAGCCCTACACAAACTGCCTGCCTGGGCTGCCGTTCAGCCCTACAGTAGCTGTCTGTCTGGGCTGCCTTTCAGCCCTACATAAACTGTCTGTCTGGGCTGCCTTTCAGTCCTACAGTAGCTGTCTGCCTGGGCTACCTTTCAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACATAAACTGTCTGTCTGGGCTGCCTTTCAGTCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACATAAACTGTCTGTCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGCCTGTGCTGCCTTTCAGCCCTACATAAACTGTCTGTCTGGGCTGCCTTTCAGTCCTACAGTAGGTGTCTGTCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGCCTGGGCTGCCTTTCAGCCCTACAGTAGCTGTCTGTCTGGGCTGCCTTTCAGTCCTACAGTAGCTGTCTGCCTGGGCTGGATTTCAGCCCTACAGAGCAGACTAGAGACCTGCCTACTAGACTCTCATGTCCTTTCCTCTCTAACACAAACATCTCCCAGCCGTGCTACAGGCCCTATCCCTATCATACTGCTTCACACATATACAATATCACATACTGTAAATACTGCAGTGGCACACATTCAACCACACAcattcaaccacacacacacacacacacacacaaatcttagTAACACAAAGTCATGGGAGATTCTGAACAAGAAAGTTGTGAAATACAGGAAGTGAATGGACATTAGTATACAACAGTATAATTAGAACAACATTGAGTTAGAAACAGAAAGTATAAATGTACTACAGAtataggattttaatttgatcaccctgttgttgcaggaaattTCAACCCctgcaaaaatgtccattaattataatctgttgtaatttcctgttgctgctgtgagaaactggtcaaatgaaGATCCTTCATCTGTATGACTATTTGTCATATCCATACACAAAGCTGGTTAAATGTAGAAAAGAAACAGAACATTGATTGAAATAATACATTCCTATACATTCAGTTTTAATTCTGCAGGTTATCCATGTTACCATTGTGAGACTAGTTCCAATACCAGCTATAGCATGTTAGCAAAGCATGCTAACAAGGGTTTCATCCTCCATGTTGCAGCCATGTTGAGTCAATCCAAGCAAAGATAGATGAGACTGGTTTGGGCGGGGTGGGGCGAGGTACAGGGTTGGGTGGAGTTCAGGGTGGTCTGGGGAAGTGTACCCCCATTGGAGGACGTTGACACCATCAGGAGTTGGTAGgtcctgttctcctcctctgtcGTCTGTCCTCACGATAGAGGCTGTTCAGATGACGGGgtgactctctcgctctctttctccttctcttttctttgtgtCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2318013 lncRNA downstream 61631 37177963 ~ 37178712 (-) True G2026795
TU2317951 lncRNA downstream 155028 37082953 ~ 37085315 (-) True G2026744
TU2317915 lncRNA downstream 205009 37034733 ~ 37035334 (-) True G2026712
TU2317727 lncRNA downstream 244203 36995888 ~ 36996140 (-) True G2026547
TU2317685 lncRNA downstream 287358 36952711 ~ 36952985 (-) True G2026505
TU2318056 lncRNA upstream 8827 37252299 ~ 37252552 (-) True G2026829
TU2318057 lncRNA upstream 9083 37252555 ~ 37252784 (-) True G2026830
TU2318182 lncRNA upstream 132046 37375518 ~ 37375899 (-) True G2026951
TU2318209 lncRNA upstream 157970 37401442 ~ 37401958 (-) True G2026978
TU2318214 lncRNA upstream 169046 37412518 ~ 37412860 (-) True G2026983
XM_021586581.2 mRNA downstream 316861 36914774 ~ 36923482 (-) True LOC110506741
XM_021586578.2 mRNA downstream 316863 36914774 ~ 36923480 (-) False LOC110506741
XM_021586585.2 mRNA upstream 61378 37304850 ~ 37308246 (-) False LOC110506744
XM_021586586.2 mRNA upstream 61378 37304850 ~ 37308246 (-) True LOC110506744
XR_005039853.1 mRNA upstream 555925 37799397 ~ 37800662 (-) False LOC118944515
XR_005039857.1 mRNA upstream 555925 37799397 ~ 37800662 (-) False LOC118944515
XR_005039855.1 mRNA upstream 555925 37799397 ~ 37800705 (-) False LOC118944515
TU2317552 other downstream 364240 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 364347 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 896909 36343156 ~ 36343434 (-) True G2025757
TU2316067 other downstream 1691586 35548260 ~ 35548757 (-) True LOC110506721
TU2316121 other downstream 1742540 35495787 ~ 35497803 (-) True G2025061
TU2318224 other upstream 176939 37420411 ~ 37421037 (-) True G2026993
TU2318287 other upstream 247380 37490852 ~ 37491416 (-) True G2027052
TU2319582 other upstream 1094381 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 1237130 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 1982891 39226363 ~ 39227059 (-) True G2028777

Expression Profile