RNA id: TU2381759


Basic Information

Item Value
RNA id TU2381759
length 830
RNA type TUCP
GC content 0.58
exon number 5
gene id LOC110508042
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40840706 ~ 40847141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATATCCTGTGCTGAGGGAGAGGTCAGCAACACAACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATCGGACCGCCTGCATCCCTCGTCAGCTCGAGTTCCTCTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGCGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTGGTTCTGGCTGCGTTCCGCTCAGCCAGGCCCGGTGCAGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCACGAGCCCTCCCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAGGTTGGCTCTGTGGTCGGCTTCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381754 lncRNA upstream 1722 40842828 ~ 40843107 (+) True G2082888
TU2381753 lncRNA upstream 2378 40842242 ~ 40842451 (+) False LOC110508042
TU2381411 lncRNA upstream 32478 40812095 ~ 40812351 (+) True G2082609
TU2381405 lncRNA upstream 38907 40805473 ~ 40805922 (+) False G2082604
TU2381767 lncRNA downstream 5760 40851799 ~ 40931560 (+) True G2082897
TU2381782 lncRNA downstream 27822 40873861 ~ 40874825 (+) False LOC110507226
TU2381784 lncRNA downstream 29987 40876026 ~ 40876430 (+) True LOC110507226
TU2381792 lncRNA downstream 49377 40895416 ~ 40897545 (+) True G2082922
TU2381855 lncRNA downstream 86704 40932743 ~ 40933003 (+) True G2082974
XM_036964769.1 mRNA upstream 4765 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA upstream 4765 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA upstream 4765 40729015 ~ 40840064 (+) True LOC110507225
XM_036964772.1 mRNA upstream 8410 40692403 ~ 40836419 (+) False LOC110507225
XM_036965113.1 mRNA upstream 176197 40667017 ~ 40668632 (+) True LOC118944712
LOC110507226 mRNA downstream 11091 40857130 ~ 40878102 (+) False LOC110507226
LOC118944684 mRNA downstream 58475 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 146039 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 317204 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 334447 41180486 ~ 41185464 (+) True LOC110508049
TU2381755 other upstream 49 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 887078 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 910994 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 931751 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 1007446 39827658 ~ 39837383 (+) True G2081884
TU2381889 other downstream 135331 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 366165 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 660320 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 1125220 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 1126789 41972828 ~ 42012992 (+) True G2083851

Expression Profile