RNA id: TU2381782


Basic Information

Item Value
RNA id TU2381782
length 217
lncRNA type sense_over
GC content 0.59
exon number 2
gene id LOC110507226
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40857130 ~ 40878102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGGCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAGACAGGAGTTCCCTAACTTCTTCAGGACCATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381758 lncRNA upstream 27822 40845472 ~ 40846039 (+) True LOC110508042
TU2381754 lncRNA upstream 30754 40842828 ~ 40843107 (+) True G2082888
TU2381753 lncRNA upstream 31410 40842242 ~ 40842451 (+) False LOC110508042
TU2381411 lncRNA upstream 61510 40812095 ~ 40812351 (+) True G2082609
TU2381406 lncRNA upstream 67939 40805620 ~ 40805922 (+) True G2082604
TU2381784 lncRNA downstream 1201 40876026 ~ 40876430 (+) True LOC110507226
TU2381792 lncRNA downstream 20591 40895416 ~ 40897545 (+) True G2082922
TU2381855 lncRNA downstream 57918 40932743 ~ 40933003 (+) True G2082974
TU2381866 lncRNA downstream 65936 40940761 ~ 40941063 (+) True G2082985
TU2381868 lncRNA downstream 67677 40942502 ~ 40942830 (+) True G2082987
XM_021588488.2 mRNA upstream 26720 40840706 ~ 40847141 (+) False LOC110508042
XM_036964769.1 mRNA upstream 33797 40692403 ~ 40840064 (+) False LOC110507225
XM_036964771.1 mRNA upstream 33797 40692403 ~ 40840064 (+) False LOC110507225
XM_036964770.1 mRNA upstream 33797 40729015 ~ 40840064 (+) True LOC110507225
XM_036964772.1 mRNA upstream 37442 40692403 ~ 40836419 (+) False LOC110507225
LOC118944684 mRNA downstream 29689 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 117253 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 288418 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 305661 41180486 ~ 41185464 (+) True LOC110508049
XM_021588498.2 mRNA downstream 319975 41194800 ~ 41203695 (+) True LOC110508050
TU2381759 other upstream 27822 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 29081 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 916110 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 940026 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 960783 39895667 ~ 39913078 (+) False LOC110507223
TU2381889 other downstream 106545 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 337379 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 631534 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 1096434 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 1098003 41972828 ~ 42012992 (+) True G2083851

Expression Profile