RNA id: XM_021588491.2


Basic Information

Item Value
RNA id XM_021588491.2
length 2776
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110508044
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40992078 ~ 40996568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGCACCTCTCTGCCAGACTCCTGCTGCTGGGGCTTCTCCTGTGGGCCAGCTGGGTTTGCTCTGCCGCACCCCAGGACGGGTGCACTTTCCTGGGGGAAGAAGAGACGAGCAGCTTCTATCAAGAGGGAGACGTGGTTCTTGGGGGCTTGTTCCCACTCCACTATAGTCCTGTGTCCTCTGTGACATCATTTCAACGGGAACCGCAACAGACTACATATGATTTCAGTGCCAGGGCCCTGCGTTGGATGGAGACCATGATGTTCGCAGTGAAAGAGATCAACCAACGAAGGGATCTGCTCCCACACCTGACGCTGGGGTTCCATATCCGCGACAGCTGTGACCATGTGCCTGTGTCCCTGAGAGGCTCCCTGCTGCTGGTCAACGGGCATCCAGAATGGGGGGCAGACTACAGGGGAGCAGGTCAGGGTCCAGGTTCGGACTGCGCCGCTGTACGCAGGGCTGTATCCCCTGTTATCATAGGAGATGCCGCCTCTGGGGTGTCTATGGCTGTGCTCAGAACTCTGGGCTCCTTTCAAATACCCCTGGTGAGCTACTTTGCGTCCTGCAGCTGCCTGAGTGACCAGAAGCAGTTCCCCACGTTCATGCGCACCATGCCCAGTGATGCCTTTCAGATAAGAGCCCTGGCTCGCCTGGTACGCTACTTCCACTGGACCTGGGTGGGCGTCATCGGGGTGGAGTCTGACTATGCACGTTTTGCCATCCAGTTGTTTCTACAGGAGTCCGTTCACTTTGGGATGTGTGCTGCCTACGTCCACTTCTACCCAGTGGTCCTTACCCAGCATGCTGTGGGACAGCTAGTGGACACTATCCAGGGGTCGTCCTCCCGAGTGCTCCTGAATTTCTCCGGCGAGTCGGAGCTTCGGAGTATCCTCAGGGAGTGTCTCCATCGGAATGTCACAGGGCTGCAACTGATCGCCAGCGAGGCCTGGGCCACCTCCAAGTCCCTGTGGAGAGAGTTTGGAGGTCTCCTGACAGGAACGCTGGGATTTGGAATACGGAAGGCTGATGTTATTCCCGGGCTCAAAGACTTCCTGACCAGACTAGGACCATCCCATGGACGTCAGTCGGCTTTCCTGGCAGAGTTCTGGGAAGAGACATTCAACTGTAGAGTGAATGAttccttaaacacacacactcactctgtcaGTTACCTGGACAGAGAGCCCTGTAGTGGAAGAGAGGTTCTGGGGGATGTGTACACACCCTTTGCCGATGTGAGCCAGCTCAGAGTATCCTATAATGTGTATAAGGCTGTGTATCTCATCGCCCATGCCCTGCAGGATATGACCAACTGTGTGGCTGGGCAGGGGCCTTTTATCAATGGCACCTGTGGGGACCCAAAGCATGTTAAACCATGGCAGCTACTACATTACATGAAGCAGGTGAAGTTTTCCACACTCGGGGAGGAGGTCAGCTTTGACCACAACGGTGACCCCATCGCTTCCTATGACCTCATGAACTGGCAGAGGGGGCAGGATGGCTCCCTGCGATTAGTTAAAGTGGGGTTCTATGACGCCTCATTGGCCGATGGCCGAGACCTGGTCATAAATGAGTCAGTGATTCAGTGGCCTGTGGGAAAGCAGGCAGCTCGATCAGTGTGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTTGACTGCATCCCCTGTGCTGAGGGAGAGGTCAGCAATCAAACTGATTCTTTAAACTGCATACGCTGCTCTGACGTCACGTGGCCAAACGAGGCCAGAGACCACTGTGTTCCAAAGACCATAGAGTTCCTGTCCTATCAGGAGTCCATGGGCGTCGTCCTGTGTGTGGTATCCATTCTTGGGGCCTGTGCCTCACTCTCTGTCTTGGCGGTGTTTGTTGCCAACCGACACACTCCCATCGTCCGCGGCAACAACATGGAGCTgagcttccttctcctcctcttcctctccatctgctTCCTGATTGGACTGTTGTTCATCGGGGAGCCCTCAGATTGGCTGTGCCGGATCCGGTACCCAGCGTTCGGGGTGAGCTTTGCCCTCTGCATCTCCTGCCTCCTTGCCAAGACCATGGTAGTCCTCATGGCCTTCAGGGCCACCCTGCCAGGAAGTGATGTCATGAGGTGGTTTGGCCCTGCCCAGCAGAGAGccagtgttgtgttgtgcactgCCGTCCAGGGACTGATCTGTCTCATCTGGCTGCTGACCAGACCTCCCTACACCAACCTCAACACCGGCcacatcagctctgtcatcatCATCGACTGTGCCATGGGGTCAGAAGTTGCCTTCTGGTGCGTTCTGGGATACATCGGCCTCTTGGCCTGCATGTGCTTCATCCTGGCCTTTCTGGCCCGGAAACTGCCGGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTTTGCTGTGTGGATAACCTTTATCCCTGTGTATGTGAGCACAGCAGGAAAGTACACAGTGGCCGTCCATGTCTTTGCCATTCTAGCCTCAGCCTTTGGCCTCCTGGTCTGTATATTTGCCCCTAAGTGCTACATTGTAGTGCTCAGACCAGAGAAAAACAGCAGGAAACACATGATGCTCAAAGGATAATATATTTCCATGTGATGATTCCTGATCAGTATGTGGAATCAATATATTTTATTAATAAAAAGTCGTACCAGTTTATAACACATTCACCACAGAGTTAATGTGCAATATTgaccatgtttaatatgttaaaTATTTTTCATAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381886 lncRNA upstream 14706 40977153 ~ 40977372 (+) True G2083002
TU2381868 lncRNA upstream 49248 40942502 ~ 40942830 (+) True G2082987
TU2381866 lncRNA upstream 51015 40940761 ~ 40941063 (+) True G2082985
TU2381855 lncRNA upstream 59075 40932743 ~ 40933003 (+) True G2082974
TU2381767 lncRNA upstream 60518 40851799 ~ 40931560 (+) True G2082897
TU2382059 lncRNA downstream 144000 41140568 ~ 41140779 (+) True G2083162
TU2382088 lncRNA downstream 174598 41171166 ~ 41172307 (+) True G2083190
TU2382091 lncRNA downstream 177365 41173933 ~ 41174215 (+) True G2083193
TU2382117 lncRNA downstream 202454 41199022 ~ 41199342 (+) True G2083217
TU2382137 lncRNA downstream 213643 41210211 ~ 41210772 (+) True G2083233
LOC118944684 mRNA upstream 84765 40904514 ~ 40907313 (+) True LOC118944684
LOC110507226 mRNA upstream 113976 40857130 ~ 40878102 (+) False LOC110507226
XM_021588488.2 mRNA upstream 144937 40840706 ~ 40847141 (+) False LOC110508042
XM_036964769.1 mRNA upstream 152014 40692403 ~ 40840064 (+) False LOC110507225
XM_021587121.2 mRNA downstream 166675 41163243 ~ 41168484 (+) True LOC110507231
XM_036965615.1 mRNA downstream 183918 41180486 ~ 41185464 (+) True LOC110508049
XM_021588498.2 mRNA downstream 198232 41194800 ~ 41203695 (+) True LOC110508050
XM_036965039.1 mRNA downstream 488621 41485189 ~ 41506611 (+) False LOC110507232
XM_036965019.1 mRNA downstream 524878 41521446 ~ 41571922 (+) True dhx36
TU2381889 other upstream 7224 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 146039 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 147298 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 1034327 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 1058243 39931874 ~ 39933835 (+) True G2081949
TU2382143 other downstream 215636 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 509791 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 974691 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 976260 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 1263955 42260523 ~ 42261637 (+) True G2084156

Expression Profile