RNA id: XM_036965615.1


Basic Information

Item Value
RNA id XM_036965615.1
length 3319
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110508049
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41180486 ~ 41185464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTATCTCTCTCCAGGTGATGAGCCTGTGTGGCAGGCTGTGGCTGCTCTACTGTCTCCATGTCCCTGGGTCTGTCTGGGGTCtggatggaggtggagagggggctTGTCGGCTGGAAGCTAAGCCCGTCTCCGGCAGTGTTTATCGGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCCATCCATGTGGAAGCCCCTCTACCAGAGCAGGAGTTCAGGAGCATTAAAGGAAATTCTACCTGTACAATGTTCAACCAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCAACCTGGGGTTCCTGGCTTCTGACACATGCCGGTCAGAGGGCACCACCCTGGGTGCGGCCCTAGCCATGGTGACCGGCAAGGAGGCCTCCGTGGTGGGCACAGAGTGTGGCACAACTCCTGAGGTTCCCGTCATCATCGGGGATGCCCGCTCCTCAGCTTCCATGGTCGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTGAGTTACTTTGCCACTTGTGCATGCTTGAGTGACAACTGGAGGTACCCCTCATTCTTCCGTACGGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTGCTGCGTCAGCTGGGCTGGGTGTGGGTGGGACTGGTGTCAGAGGATGGTGACTATGGCAAGTTTGGGGTTCAGGTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCCTACTCTGAGGTCCTCCCCAAGTTACCATCTAAGAGAAAGATCAGGCACATTGCAGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCATTTGTTGGATTCGCGGGTCATTCAGGGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGGCCTGGGTCACTTTCTCTACTATCGCCGCCCCAAAAAACCTGCCCTCTCTTGCCGGGACAATCGGTTTTGCCCTGAAGAAAGCTGAAATTCCCGGCTTGGGGCCTTTCCTAACACGCCTCCATCCAGACGGGGACTACCAGAAGTCCGACCCCTTCCTGAGGGAATTGTGGGAGGAGATGTTTGTGTGTTCTCTGGGGGTTGACCCCAGCGTGACACTGCCTTCCAGGCGACAGTGTACTGGGTCAGAGGTCATACGTGAAGGGGAGAGCCAGTATGCTGACGTGTCTCAGCTGAGAGCCAGCTACAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGATGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAGATGAGGTCCCTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAAGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGAGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCATCTACCACCGTCACACTGCCCTGGTGAAAGCCAACAACTCAGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCACTGGTTTTCATTGGCCGGCCGAAGCCGTGGACATGCATGCTGAGACACACCCTGTTTGGTATAAGCTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGCTGGCCTTAGCTCCACCCCGACCTGCTgagaggaggggcagagagggtcggGGCCCGAGGGTCATCCTGGAGTGTGAGGTGGGTTCTGTGGTCGGCTTCTCTCTGGTGCTAAGCTACATCGGCCTTctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTTAATGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAATGTTTCATTATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATagaaaccaccaagaaacacatgatgtccaaatagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacattATGGACAAATAGAAACCACCAGGAAACACATGATGTCCAATTagaaaccaccaagaaacacatgaTGGACAAATagaaaccaccaagaaacacatgaAGTCCAATTCGAAACCATTAAGAAACACATGATGGACAAATagaaaccaccaagaaacacatgaTGTCCAATTCGAAACCATTAAGAAACACATGATGGACAAATagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaaatagaaaccaccaagaaacacatgatgtccaattagaaactaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatattgtccaattagaaaccaccaagaaacacatgaTGTCCAAATATTAACTTACACATGCTCATATCGTGATTTAGGGCTCGTTGAGAATCAACATGGGAATGTCCATTCTGTTTGGAAACATTATTTTCCTCCTTCACTTCACTTTGTTAATATTAGAATGTGTTCTTATAGTGTGTCAGAATGAAATATGAACAATACCAATAAAGTTTACTTAGTGTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382091 lncRNA upstream 6271 41173933 ~ 41174215 (+) True G2083193
TU2382088 lncRNA upstream 8179 41171166 ~ 41172307 (+) True G2083190
TU2382059 lncRNA upstream 39707 41140568 ~ 41140779 (+) True G2083162
TU2381886 lncRNA upstream 203114 40977153 ~ 40977372 (+) True G2083002
TU2381868 lncRNA upstream 237656 40942502 ~ 40942830 (+) True G2082987
TU2382117 lncRNA downstream 13558 41199022 ~ 41199342 (+) True G2083217
TU2382137 lncRNA downstream 24747 41210211 ~ 41210772 (+) True G2083233
TU2382157 lncRNA downstream 53669 41239133 ~ 41239467 (+) True G2083251
TU2382266 lncRNA downstream 134942 41320406 ~ 41320649 (+) True G2083351
TU2382273 lncRNA downstream 138363 41323827 ~ 41324040 (+) True G2083358
XM_021587121.2 mRNA upstream 12002 41163243 ~ 41168484 (+) True LOC110507231
XM_021588491.2 mRNA upstream 183918 40992078 ~ 40996568 (+) True LOC110508044
LOC118944684 mRNA upstream 273173 40904514 ~ 40907313 (+) True LOC118944684
LOC110507226 mRNA upstream 302384 40857130 ~ 40878102 (+) False LOC110507226
XM_021588488.2 mRNA upstream 333345 40840706 ~ 40847141 (+) False LOC110508042
XM_021588498.2 mRNA downstream 9336 41194800 ~ 41203695 (+) True LOC110508050
XM_036965039.1 mRNA downstream 299725 41485189 ~ 41506611 (+) False LOC110507232
XM_036965019.1 mRNA downstream 335982 41521446 ~ 41571922 (+) True dhx36
LOC118944685 mRNA downstream 593457 41778921 ~ 41781836 (+) True LOC118944685
XM_021587167.2 mRNA downstream 1045894 42231358 ~ 42242002 (+) True LOC110507284
TU2381889 other upstream 195632 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 334447 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 335706 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 1222735 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 1246651 39931874 ~ 39933835 (+) True G2081949
TU2382143 other downstream 26740 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 320895 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 785795 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 787364 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 1075059 42260523 ~ 42261637 (+) True G2084156

Expression Profile