RNA id: TCONS_00055154


Basic Information

Item Value
RNA id TCONS_00055154
length 962
lncRNA type retained_intron
GC content 0.48
exon number 9
gene id XLOC_028405
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1825839 ~ 1839352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGCAGTGACGACGGCAGCCTAGAGAATCCTCGTGTTGTGTCATTTTATCACTATAAACATACACAAATCAGTCATGAGCGCTCAAATAACGTGTGTCGGATGGGTGAAGCGTGGAGTCGCCAAAGAAACGCCGGATAAAGTGGAGCTGAGCAAAGAAGAGCTGCAGCGCATCATTTCAGAGGCCAAAGAGGAGTTAAGAAGGGAAACTCTTGATATCTCCAGGGATCgagatgaagaggaggaggaagatgagGCTGATGAAGGTGTGGTCAGTGGTCTGGATAGTAAAGAAGAGGCTTCAGCTCCTGCGACTGTTGAAGaaggaataaaaaagaaagaggaTGGAAATGAGGAAGACGATGAGCTTGCAGAGTATGACCTAGACAAGTATGATGAAGAGGACATCGCTACATCAAATCTTGGAGACAGTTTAGCAGGATTGACTGTCTTTGGCACCAATGAAGAGGATCCATACGTCACCATCAAAGACAccGATCAGTACGAGCGTGAGGATTTTCAGATTAAACCCACTGATAACCTGATTTTGGCTGGGCGAGCTGAGAAAGAATGCTGCAATCTGGAGATTCATgtgTATAATTCAGAAGAAGACTCTCTATATGTGCACCATGACATCCTGCTGCCCGCGTATCCCCTGTGTGTGGAGTGGCTGAACTTTGACCCAAACCCAGAAGAACAACAAGGGAATTACGCAGCCGTGGGAAACATGACGCCTGTGATTGACGTTTGGGATCTAGATGTTGTCGACTGTTTAGAACCGGCTTTTTCACTCGGCagcaagaaagagaaaaagaagaagaagaaagccAAGAAGGCTGCAGAGCCCATTGAAGGCCACACAGATGCTGTGCTGGACCTGTCCTGGAACAGACTGGTCAGGAATGTTCTAGCGAGCGCGTCTGCGGATGAGACGGTGATACTGTGGGATCTGGAGAAAGGCAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1049 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

Ensembl:

ensembl_id ENSDART00000139376

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 571997 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 597502 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 726962 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 795692 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 808038 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057984 lncRNA upstream 9496 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 76622 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 77111 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 102869 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057987 lncRNA upstream 134983 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00055151 mRNA downstream 6902 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055150 mRNA downstream 13423 1809562 ~ 1818315 (-) True XLOC_028403
TCONS_00055149 mRNA downstream 30119 1801199 ~ 1801619 (-) True XLOC_028402
TCONS_00055148 mRNA downstream 30219 1788748 ~ 1801519 (-) False XLOC_028402
TCONS_00055146 mRNA downstream 46618 1766333 ~ 1785120 (-) False XLOC_028401
TCONS_00055155 mRNA upstream 39409 1878573 ~ 1908179 (-) False XLOC_028407
TCONS_00055156 mRNA upstream 41016 1880180 ~ 1914228 (-) True XLOC_028407
TCONS_00055157 mRNA upstream 81847 1921011 ~ 1930024 (-) True XLOC_028409
TCONS_00055158 mRNA upstream 149296 1988460 ~ 2036620 (-) False XLOC_028410
TCONS_00055159 mRNA upstream 150325 1989489 ~ 2014406 (-) True XLOC_028410
TCONS_00055131 other downstream 882896 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1023285 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1146319 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 221360 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 835942 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2653402 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2707045 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3091247 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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