RNA id: TCONS_00057308


Basic Information

Item Value
RNA id TCONS_00057308
length 603
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_028408
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1915786 ~ 1979057 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCCTGAGccttcctccaacaacttttgaaATAGAAAAGATTAAAAAAGTGACTAATATTTTTATACCATTATGTCAAGTTTAGGCTTTGTAGGTGTTTCACATTTAATATCTTACTCGTGTAACAGTTTTGGCACTTTATATGACTTTATGTTTTACCAAACCAACAGTAAAATAATTGTGCTTATAAAATATCGTCACACATATGATTTAAAACCttcatgtgtgtttatttgtgtgtgttttttctcctGTAAGGTGAAGTGAGTGTAAATGATGGAAATATCTGTGACGTTCCTCCTTGCTGGATGTCTGATACAAGgTGTTTTATGTGGCTTCAGTATCAGTCTGCTGGAGAGAGTAGAAGCTCTAAAGGATCCTGTGTTTATATACCCTGCACATTCAATATTGATGAAGATTATAAAGATGACCTCACTGATACTGCAAAGAGATTATGGTATAAAGATGGAAAACCTGCAGTTTTGGTGTTTGACTCCAGCAGCCCTGACAGTGGACTCTTAACAGGAGAAATATTTGGCAAACCTACAGATAAAAGGTGCAGCACTCGCTTCTATAATCTCAAACTAACAGACAGTGGCTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057984 lncRNA downstream 60015 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00055154 lncRNA downstream 76622 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057982 lncRNA downstream 656045 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 681550 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 811010 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057986 lncRNA upstream 25467 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057987 lncRNA upstream 57581 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00055164 lncRNA upstream 128840 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057309 lncRNA upstream 475506 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00057988 lncRNA upstream 529191 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00055156 mRNA downstream 1558 1880180 ~ 1914228 (-) True XLOC_028407
TCONS_00055155 mRNA downstream 7607 1878573 ~ 1908179 (-) False XLOC_028407
TCONS_00055152 mRNA downstream 76434 1825839 ~ 1839352 (-) False XLOC_028405
TCONS_00055153 mRNA downstream 76594 1827012 ~ 1839192 (-) False XLOC_028405
TCONS_00055151 mRNA downstream 90950 1821637 ~ 1824836 (-) True XLOC_028404
TCONS_00055157 mRNA upstream 4445 1921011 ~ 1930024 (-) True XLOC_028409
TCONS_00055158 mRNA upstream 71894 1988460 ~ 2036620 (-) False XLOC_028410
TCONS_00055159 mRNA upstream 72923 1989489 ~ 2014406 (-) True XLOC_028410
TCONS_00055160 mRNA upstream 124501 2041067 ~ 2059233 (-) False XLOC_028411
TCONS_00055161 mRNA upstream 128566 2045132 ~ 2052687 (-) False XLOC_028411
TCONS_00055131 other downstream 966944 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1107333 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1230367 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 143958 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 758540 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2576000 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2629643 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3013845 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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