RNA id: TU2380394


Basic Information

Item Value
RNA id TU2380394
length 286
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G2081796
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39701470 ~ 39701755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggcgagggagggagagagagagagagattctatcAGGAAGCTACATGACACTGTCCTACTGACACAGAGAACAGTGGGGTCAACAGTCAGCCTCCTCGAGCCTCACAACACATCCAACTGGATGTACAACACAGGCATCACAGACATCCCTCTGACCCTccaactccctctctccttcccactttccatctctctccctccctccatgtctcgccctccctccatctccttctcactttccatctttctccctccctccatctctctccctccctccatctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2380380 lncRNA upstream 7964 39682685 ~ 39693506 (+) False G2081792
TU2380382 lncRNA upstream 7964 39683858 ~ 39693506 (+) False G2081792
TU2380384 lncRNA upstream 7964 39688058 ~ 39693506 (+) True G2081792
TU2380389 lncRNA upstream 9518 39683582 ~ 39691952 (+) True G2081793
TU2380386 lncRNA upstream 12912 39685894 ~ 39688558 (+) False G2081792
TU2380395 lncRNA downstream 1704 39703459 ~ 39703984 (+) True G2081797
TU2380398 lncRNA downstream 7686 39709441 ~ 39709756 (+) True G2081800
TU2380415 lncRNA downstream 24163 39725918 ~ 39728025 (+) True G2081813
TU2380467 lncRNA downstream 74407 39776162 ~ 39806327 (+) False G2081845
TU2380468 lncRNA downstream 74407 39776162 ~ 39822521 (+) True G2081845
XM_036964981.1 mRNA upstream 258 39694561 ~ 39701212 (+) True LOC110507222
XM_036965220.1 mRNA upstream 19910 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA upstream 21338 39668004 ~ 39680132 (+) True LOC110508028
XR_005040116.1 mRNA upstream 661845 39039573 ~ 39039625 (+) True LOC118944799
XM_021588440.2 mRNA upstream 1073300 38619550 ~ 38628170 (+) True LOC110508002
XM_036965017.1 mRNA downstream 79434 39781189 ~ 39938079 (+) False LOC110507223
XM_021586905.2 mRNA downstream 593076 40294831 ~ 40297552 (+) False ssr3
NM_001160569.1 mRNA downstream 593085 40294840 ~ 40297545 (+) True ssr3
XM_036965107.1 mRNA downstream 959491 40661246 ~ 40670079 (+) False LOC110508037
XM_036965110.1 mRNA downstream 959557 40661312 ~ 40670079 (+) False LOC110508037
TU2378436 other upstream 1756319 37944932 ~ 37945151 (+) True G2080014
TU2377942 other upstream 1882184 37815878 ~ 37819286 (+) False G2079657
TU2377944 other upstream 1882184 37815878 ~ 37819286 (+) True G2079657
TU2377712 other upstream 2333334 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 2420638 37279105 ~ 37280832 (+) True G2079197
TU2380510 other downstream 125903 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 193912 39895667 ~ 39913078 (+) False LOC110507223
TU2380578 other downstream 230119 39931874 ~ 39933835 (+) True G2081949
TU2380828 other downstream 255460 39957215 ~ 39957751 (+) True G2082162
TU2381755 other downstream 1141759 40843514 ~ 40844780 (+) False LOC110508042

Expression Profile