RNA id: TU2377335


Basic Information

Item Value
RNA id TU2377335
length 1264
RNA type TUCP
GC content 0.53
exon number 2
gene id G2079197
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37279105 ~ 37280832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttGGTGTCTGCGTAGCTTGCTGATCTGCTCTgcttttctctccattctcttgaGTAgagtctcctgttctctctccacccccctcctctcccgctcacacacacaggcctcaGCCTGCCGCACCAACTCCTGCtgctcactgacacacacacacatttacatacacAACTGAGATAGCTATTCATGCTGAAACAAAGTCTCAGActctaacagacagacacactcacagactCATGTGTCCCAGTTCATCCTGCAGGGCCAGCAGGAGGTCTGATAGCTCCTCcccacaggaagaggaggagccgCTGCCATTGGCTTGCTGGGCCAGAGGGGTGTGGGAGAGGACGCGTGCGTTACATAGCTGGGGCTGATGCTGCTTCAGCAGGGAGAGAACAGACTGGACGTTGGCCCTGACCGAGTGACTGCACcctacagactagagagagatgaccgagtgactgcaccctacagactagagagagatgacagagtgactgcaccctacagactagagagagacagagatgaccgagtgactgcaccctacagactagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgacagagtgactgcaccctacagactagagagagagacagagatgacagagtgactgcaccctacagacaagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgaccgaGTGACTGCACCCtgcagactagagagagacagagatgacagagtgactgcaccctacagactagagagagacagagatgacagagtgactgcaccctacagactagagagagacagagatgacagagtgactgcaccctacagactagagagagagacagagatgacagagTGACTGCACCCtgcagactagagagagacagagatgacagagagacagcaccctgcagactagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacagagatgaccgagtgactgcaccctacagactagagagagagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377330 lncRNA upstream 139 37277709 ~ 37278966 (+) False G2079194
TU2377331 lncRNA upstream 139 37277709 ~ 37278966 (+) True G2079194
TU2377323 lncRNA upstream 19981 37257044 ~ 37259124 (+) True G2079188
TU2377298 lncRNA upstream 22792 37252761 ~ 37256313 (+) True G2079170
TU2377290 lncRNA upstream 83134 37195748 ~ 37195971 (+) True G2079164
TU2377348 lncRNA downstream 26463 37307295 ~ 37307932 (+) True G2079207
TU2377358 lncRNA downstream 40737 37321569 ~ 37323327 (+) False G2079213
TU2377359 lncRNA downstream 40737 37321569 ~ 37323015 (+) False G2079213
TU2377357 lncRNA downstream 41483 37322315 ~ 37323015 (+) True G2079213
TU2377699 lncRNA downstream 79722 37360554 ~ 37360820 (+) True G2079457
XM_036964740.1 mRNA upstream 4023 37031161 ~ 37275082 (+) False LOC110536894
XM_036965234.1 mRNA upstream 415138 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 415138 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 415138 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 415138 36736717 ~ 36863967 (+) True LOC110507948
XM_036965198.1 mRNA downstream 37884 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 224729 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 224897 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 255697 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA downstream 271882 37552714 ~ 37568873 (+) True LOC110508012
TU2377138 other upstream 2248 37273486 ~ 37276857 (+) True LOC110536894
TU2376553 other upstream 839751 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 977063 36300938 ~ 36302042 (+) False G2078493
TU2377712 other downstream 85907 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 535046 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 535046 37815878 ~ 37819286 (+) True G2079657
TU2378436 other downstream 664100 37944932 ~ 37945151 (+) True G2080014
TU2380510 other downstream 2546826 39827658 ~ 39837383 (+) True G2081884

Expression Profile