RNA id: TU2377323


Basic Information

Item Value
RNA id TU2377323
length 1356
lncRNA type intronic
GC content 0.37
exon number 4
gene id G2079188
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37257044 ~ 37259124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGAACTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACACCTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAAGAACTGAACTAACACTACACTGGAGTAAACACCTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACACCTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACACCTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAAGAACTGAACTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAAGAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAAGAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTTACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTAAACTAACACTATACTATAGTTAACAACTGAACTAACACTACACTAGAGTTAACAACTGAACTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAATTAACACTACACTGGAGTAAACAACTGAACTAACACTACACTGGAGTAAACAACTGAACTGACACTACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377298 lncRNA upstream 731 37252761 ~ 37256313 (+) True G2079170
TU2377290 lncRNA upstream 61073 37195748 ~ 37195971 (+) True G2079164
TU2377288 lncRNA upstream 62397 37194388 ~ 37194647 (+) True G2079162
TU2377287 lncRNA upstream 62924 37193831 ~ 37194120 (+) True G2079161
TU2377284 lncRNA upstream 65207 37186691 ~ 37191837 (+) True G2079158
TU2377330 lncRNA downstream 18585 37277709 ~ 37278966 (+) False G2079194
TU2377331 lncRNA downstream 18585 37277709 ~ 37278966 (+) True G2079194
TU2377348 lncRNA downstream 48171 37307295 ~ 37307932 (+) True G2079207
TU2377358 lncRNA downstream 62445 37321569 ~ 37323327 (+) False G2079213
TU2377359 lncRNA downstream 62445 37321569 ~ 37323015 (+) False G2079213
XM_036965234.1 mRNA upstream 393077 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 393077 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 393077 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 393077 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 407026 36707926 ~ 36850018 (+) False LOC110507948
XM_036965198.1 mRNA downstream 59592 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 246437 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 246605 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 277405 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA downstream 293590 37552714 ~ 37568873 (+) True LOC110508012
TU2376553 other upstream 817690 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 955002 36300938 ~ 36302042 (+) False G2078493
TU2377138 other downstream 14362 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 19981 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 107615 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 556754 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 556754 37815878 ~ 37819286 (+) True G2079657

Expression Profile