RNA id: TU2377138


Basic Information

Item Value
RNA id TU2377138
length 2922
RNA type TUCP
GC content 0.40
exon number 5
gene id LOC110536894
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37031161 ~ 37276857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaTCGTGCTATGCTGCCTTTCTCAGAGCTTGCCATGTTGGACCATAGATACAAACAGACACAGAGGCCAAACAGTATCTCCAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGATAGTGTGTCGGTTAACAGTGTGTTGGTTATCAGTGTGTTGGTTATCATTGTGTTGGTTAACAGTGTGTTGGTTATCATTGTGTTGGTTAACAGTGAGTTCACTGTCTCAGGAGTTTAAAACACACTACCACTCAACTCCAATCAATCAGTCACCTAAATGTTAAACTAATGTGTGAAACTGCTGCTCGGTGAAGCCAGAGCAACAGCTTAGCCTCACCACATGTCAGGgcttacatactgtatatgtggAAGAATTAAGGCCATACAGGTCAATATATTTGTTAAAAGGGCGTACAGGTCAATATATTTGTTAGGTGAATGAACTGGGGATCTTGGTTAGGTGACAGGGGCGTACAGGTCAATATATTTGTTAGGTGAGTGGGCTATAGGTGAATATATGGATGGACTGCATATAGCTTCATATATTTTGTAGATGATTACAGATTAACTTCCTCTTTtcccctgttgttgttgttgttgttgttttccgcCCATCCATTCCAGATCTGCCTTCTTCATATGtattttgatgatgatgatgcagaAACTCTGATGTAAATACAGTCTGCTCTTAAATTATTACTTTAGACAGTTGTCTCTCTTAACTTTGTTTTACGTTAGTGTGTTTGTGTCAACGAGTCAGGGCTCCGTCATGTGCCAATCTCCATCTCCACGGAAACGCAGGATTCTTACCTGTGATGTAATCTCATAGGCTATATATAAATGCTGTAAATAACAGTTTATGAAGTGTTACTTGATTCTATGTAATTATTACAATGAGGACTATTTTAATTATTTCatgttatacagttgaagtcggaagtttgcagacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatatagttttggcaagtcggttaggacatctactttgtgaatgacacaagtcatttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacatacactaaattgactgtgcctttaaacagcttggaaaaatccagaaaatgatgtaatggcttcctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggtctaccttcaaactcagtgcctctttgcttgacatcatgaaaaaaatcaaaataaatccaaataaaaaataaatcagccaagacctcagaaaaaaaattgtagacttccacaagtctggttcatccttgggagcaatttccaaacacctgaaggtaccacgttcatttgtacaaacaatattacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtctcctagggatgaacgtacttcggtgtgaaatgtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggccactcagaaaggaagaagccactgctccaaaaccgccataaaaaagtcagactacggtttgcaaatgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatggaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccgaaaaacaccatcccaaccatgaagcacgggggtggcagcatcatgaggcagggaaaatgatgtggatacattgaagcaacatctcaagacatcagtcgggaagttaaagcttggtcgcaaatgtgtcttccaaatggacaataaccccaagcacatttccagttgtggcaaaatggcttaaggacaacaaactcaaggtattggagtggccatcacaaagccctgacctcatatagaacatttgtgggcagaactgaaaaagcgtgtgagagcaaggaggtacaaacctgactcagttacaccagctctgtcaggagaaatgggccaacattcacccaacttattgtgggaagcttgtggatggctgcccgaaacgtttgaccaatgttaaacaatttaaaggcagtgctaccaaatactaattgagtgtatacaaacttctgaccccctgggaatgtgatgaaagaaataaaagctgaaataaatccttctctctactattattctgacagttcacattcttaaaataaactggtgatcctaactgacctaaaacagggaatttttacttggattaaatgtcaggaattgtaaaaaattgagtttatatgtatttagctaaggtgtatgtaaacttccaacttcaactggggcggcagggtagcctagtggttagagtgttggactagtaactgaaaggttgcaagttcaaatccccgagttgacaaggtacaaatctgtcgttttgcccctgaacaggcagttaacccactgttcctaggcggtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaatcaaCTGTATACTGTGGTTGTAGTTGAATCATCTTTTTCTCTCATTTTCATTGTGTTATTGAAGGGCCCAAAACATGCAGACCTACGGCTCAGACAGAGGAGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377323 lncRNA upstream 14362 37257044 ~ 37259124 (+) True G2079188
TU2377298 lncRNA upstream 17173 37252761 ~ 37256313 (+) True G2079170
TU2377290 lncRNA upstream 77515 37195748 ~ 37195971 (+) True G2079164
TU2377288 lncRNA upstream 78839 37194388 ~ 37194647 (+) True G2079162
TU2377287 lncRNA upstream 79366 37193831 ~ 37194120 (+) True G2079161
TU2377330 lncRNA downstream 852 37277709 ~ 37278966 (+) False G2079194
TU2377331 lncRNA downstream 852 37277709 ~ 37278966 (+) True G2079194
TU2377348 lncRNA downstream 30438 37307295 ~ 37307932 (+) True G2079207
TU2377358 lncRNA downstream 44712 37321569 ~ 37323327 (+) False G2079213
TU2377359 lncRNA downstream 44712 37321569 ~ 37323015 (+) False G2079213
XM_036965234.1 mRNA upstream 409519 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 409519 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 409519 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 409519 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 423468 36707926 ~ 36850018 (+) False LOC110507948
XM_036965198.1 mRNA downstream 41859 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 228704 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 228872 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 259672 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA downstream 275857 37552714 ~ 37568873 (+) True LOC110508012
TU2376553 other upstream 834132 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 971444 36300938 ~ 36302042 (+) False G2078493
TU2376424 other upstream 971444 36300938 ~ 36302042 (+) False G2078493
TU2376426 other upstream 971444 36300938 ~ 36302042 (+) False G2078493
TU2376427 other upstream 971444 36300938 ~ 36302042 (+) True G2078493
TU2377335 other downstream 2248 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 89882 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 539021 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 539021 37815878 ~ 37819286 (+) True G2079657
TU2378436 other downstream 668075 37944932 ~ 37945151 (+) True G2080014

Expression Profile