RNA id: XM_036965780.1


Basic Information

Item Value
RNA id XM_036965780.1
length 1378
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110508012
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37536529 ~ 37568873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggggatggctGCCATCTGTCCGACTGTACTTTTATAAGATCTCATCATCTGTTCATTCAGGTTTTATGTGTGGTTTGGTTTTATGATTCTGCTTTtcgtcagtcagtcagATCTGTTTATGAACAAAAATGGCTACCTTCGCCAACCACTCAACAAATGAGAGCAGCgggcacagctggcgctgtcAATTCAAGGAGGACTTCAAGTACATCCTGCTTCCTGTCAGCTACACTCTGGTCTTCGTGATTGGCCTAGCCCTGAATGTCACGGCCATGTACGTGATCCTGTTCCGTACAAAACGCTGGAAGCCCTCCACGGTGTACATGTTCAACCTGACAGTGTGCGACACCCTCTACATCCTCACCCTACCCTTCCTAATCTACTACTACGCCGACGAGAACGACTGGCCCTTCAGCGAGCCGTTCTGCAAACTCATCCGCTTCCTGTTCTACGCTAACCTCTACGGTTCCATCCTGTTCCTGTGCTGCATCAGCCTGCACCGCTTCCTGGGTGTGTGCTACCCGATGAGGTCACTGAGCTGGGTCAGCTCCCGGAGAGCCCGGCTGGTGTCTGTGGCGGTGTGGGCGTGTGTGTTGATGTGCCAGGCTCCCGTGCTCTACTTCTCACGCACCAGGGacgaggggacagagagggtgtGTTTCGACACGTCCAGTCCAGAGTTATTTCATCACTTCCTGGTGTACAGCTCGGTGGTGTCTGTCCTGATGTTTGCCTTCCCCTtcatggtggtgatggtgtgctATGGACTGATGGTGAGGAAGCTTCTGGAGCCCACCTGGGGGGCAGGAGGGAGCCAGTCGAGGGGAGTCGGGGGGCTCGCTGCTCATCGCTCCAAACACAAGTCTGTGAAGATGATAATCATTGTGTTAGCAGTGTTCATGCTGTGTTTCCTACCCTTCCACCTGACCAGAAGTCTGTACTACTCCCTCAGATACCTGGAGCAGATGGATCCCTCCCAGGTGAGCTGTGAGCTGCTGAAGGTGTCCAGCATGGCCTATAAGGTGACACGCCCCCTGGCCAGCGCCAACAGCTGTGTGGATCCCATCCTCTACTTCATGGCTGGACAGGGTTTCCGTAGAAACTTCACTAACAGAAGCAGGGCATCACAAATGAAACCAGGAAGCGTGACGGCGGCACTCTCGACGCAGCTCTGACCGACAGGAAGATCAATCTGTTATCTGAATAGCTATGGAACACAGTGTGTATTCCATTGGAATGGAGAAAACACAGTTCGACAAAGACACTGGATGGAtgatttgaccctgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccaccccacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377713 lncRNA upstream 166793 37368859 ~ 37369736 (+) True G2079469
TU2377709 lncRNA upstream 170622 37365664 ~ 37365907 (+) True G2079465
TU2377705 lncRNA upstream 172145 37363277 ~ 37364384 (+) True G2079462
TU2377701 lncRNA upstream 174671 37361581 ~ 37361858 (+) True G2079459
TU2377700 lncRNA upstream 175229 37360939 ~ 37361300 (+) True G2079458
TU2377861 lncRNA downstream 58948 37627821 ~ 37631175 (+) False G2079600
TU2377863 lncRNA downstream 58948 37627821 ~ 37629717 (+) False G2079600
TU2377864 lncRNA downstream 58948 37627821 ~ 37629717 (+) True G2079600
TU2377870 lncRNA downstream 70013 37638886 ~ 37639112 (+) True G2079606
TU2377871 lncRNA downstream 84926 37653799 ~ 37654022 (+) True G2079607
trnat-agu-152 mRNA upstream 30727 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 30895 37505561 ~ 37505634 (+) True trnat-agu-151
XM_036965198.1 mRNA upstream 178923 37318716 ~ 37357606 (+) True mre11a
XM_036964740.1 mRNA upstream 261447 37031161 ~ 37275082 (+) False LOC110536894
XM_036965236.1 mRNA upstream 672562 36707926 ~ 36863967 (+) False LOC110507948
XM_021588455.2 mRNA downstream 483760 38052633 ~ 38060113 (+) True LOC110508017
LOC110507217 mRNA downstream 901045 38469918 ~ 38474599 (+) True LOC110507217
XM_021588440.2 mRNA downstream 1050677 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 1470700 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 2099116 39667989 ~ 39681560 (+) False LOC110508028
TU2377712 other upstream 168393 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 255697 37279105 ~ 37280832 (+) True G2079197
TU2377138 other upstream 259672 37273486 ~ 37276857 (+) True LOC110536894
TU2376553 other upstream 1097175 36438375 ~ 36439354 (+) True LOC110508005
TU2376427 other upstream 1234487 36300938 ~ 36302042 (+) True G2078493
TU2377942 other downstream 247005 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 247005 37815878 ~ 37819286 (+) True G2079657
TU2378436 other downstream 376059 37944932 ~ 37945151 (+) True G2080014
TU2380510 other downstream 2258785 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 2326794 39895667 ~ 39913078 (+) False LOC110507223

Expression Profile