RNA id: XM_036964740.1


Basic Information

Item Value
RNA id XM_036964740.1
length 5799
RNA type mRNA
GC content 0.48
exon number 31
gene id LOC110536894
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37031161 ~ 37276857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAGAGCGCAGGAGAGCGGGAGAGGAGAGTGCGTGTTCTGTCTTATGCGCACTTCTGACTGCTCTGGTTTgcttgacagtgtgtgtgtgtgtgtgtgtgtgtttttgagtcCTGCGCTCAGCATACGGCAGGTGGAGATGACATGACTGCGcttgagaggaagagagggagggacctACGCGGTCAACAAGTATTCCTGAGGCCAGACGAGACCGCAGCTCTAACCCTGACTGACCGACTACAGTGATGATGCGTGCGGTTTGCCGGGCGGAGGGCAGCGCTAGGCAGCGGCTGAGGGAGGAGGATGCTTTACTGCGGCTGGCAGGAGTTGTTGACGTGCGCTCACTCCGAGATGCTCTCAGAGAGACCGCACAGGGGCTACTGCCCAGCGTGgagtgtgtttgtgtgtacgtgcTGGAGAGAGACTCGAGGCTACAGTGTGACGACCCAAGCCATGAGCTGCCAAAGGAGGGGAAGATCAGGGATATGGTGGGTCAgttgaagaggtgtgtgtgtgccggtCTACCTCCCTCAGAGATGCACGAGAAACACAGGAGCAGCCTTGCAGCACCCCTCCCACCCCACAGACgagctgtggTAATTCCTCTCGTGGACCAGGAACAAGGAGTTGTCATCTCAGTCTTACTGGTGGGCTGTAAACCGCTGAGTGATCAAGACGAACAACACCTCAACACTCTGGAGAAACATgcagctGTAGCGTGTAGGAGGGTACGAACCCTGCAGTCGGCCAATCAGAAGTCTCTCGTCAGCCTGTCACCGATCCAGCCCCACAATGCACTGCTCCGGCCCGACCCCACAGACTACTGTGACCTGGACCGCAAGATTCTACAGCTgtgtggtgagctGTATGACCTTGATGCAACTACTCTTCAGCTCAAAGTAATCAATTATTTGCAGCAGCAGACCCAGTCTCAGTGCTGCTGTCTGCTTCTGGTTTCTGAGGACAACCACCAGCTCTTCTGTCAGgtGGTTGGAGACAAAGTTCTGGAGGAGGAGATCAGCTTCCCTCTGATGTTTGGGCGCTTTGGGCAGGTAGTGGAGAAGAAGAGATCCATCACTCTTCAGGACGTCACTGCGgaGGAGCGTAGACAGCTATCCAGTATGCTGGGCAGTGAGGTGTCCTCTCTGCTATGTGTCCCTGTGGTCAGCAGAGCCACTGGCCAGGTGGTGGCACTAGCCTGCGCCTTCAACAAACAGGGAGGACAgagACACACGGATGTGGATGAACATACGATCCAGCACTGCTTCTGTTACACCTCCACTGTCCTCACCTCCACACTGGCCTTCCAGAAAGAACAGAAACTCAAAGTGGAGTGTCAGGCACTGTTACAGGTGGCCAAGAATCTCTTCACACATCTGGatgaTGTCTCCGTGTTGTTGCAAGAGATTATAGTGGAGGCCAGGAACCTCAGTGATGCAGAGATTTGCTCTGTGTTCCTACTGGATCAAGTCAGCCATGAGCTGGTTGCCAAGGTTTTTGATGGGGGCGTGGTCAGTGATGATGAGaAGGAGTTCCGTATCCCTGCAGACCAGGGCATAGCGGGTCATGTAGCTATGACTGGGCAGATCCTGAACATTAAGGATGCGTACTCCCACCCTCTGTTCTACCGAGGAGTGGACGACAGCACCGGGTTTAGAACACGGAACATCCTCTGCTTCCCCATCAAGGACGAGAACAACGaggttaTTGGGGTGGCTGAGTTGGTCAATAAGACTAATGGACCATGGTTTAACCGCTTCGATGAGGACCTGGCCACTGCTTTCTCCATCTACTGTGGAATCAGCATCGCACACTCTCTTCTGTATAAGAAGGTCCATGAGGCTCAGTTCAGATCCCACCTGGCCAACGAGATGATGATGTACCACATGAAGgtGTCAGCAGAGGAGGTGACCCAGCTGTTGGTAACTGGGCTGGAGCCAGTGGAAGAGATTCATCCCTTATTCGCTGAGTTCACCTACACACCCCGTTCACTACCTGACGACAACACACCCATGGGCATCCTGAGTATGTTTGAGGACATGGGCTTCATCAACGCCTATAAGATTGACCTGCACACTCTGGCCAGGTTCTGTCTGATGGTAAAGAAGGGTTACAGAGATCCTCCCTATCACAACTGGACACACGCGTTCTCGGTCTCTCACTTCTGTTATCTCCTCTACAAGAACCTGGGCCTGGCCAACTACCTGGAgaATATAGAGATCTTTGCTCTCTTTGTCTCCTGTATGTGTCATGACCTGGACCACCGTGGGACTAACAACTCCTTTCAAGTGGCCTCACAATCTGTCCTGGCTGCCCTCTACAGCTCAGAGGGCTCTGTGATGGagCGACACCACTTTGCCCAAGCCATAGCCATTCTGAACACCCACGGCTGCAACATCTTCGACAAGTTCTCCAGAAAGGACTACCAGAGGATGTTGGACTTGATGAGGGATATTATCCTGGCCACTGACCTGGCTCACCACCTCCGCATCTTCCCCGACCTGCAAAGGATGGCTGACGctgGCTACAATCCCAGGAATCAGACCCACCGTTCTCTGCTGCTGTGCCTGCTGATGACCTCATGCGACCTGTCGGACCAGACCAAGGGCTGGAAGACCACCCGCAAGATTGCTGAGCTGATCTATAAAGAGTTCTTCTCCCAGGGGGATCTGGAGAAGGCGATGGGGAATCGTCCCAGTGAGATGATGGACAGAGAGAAGGCCTACATCCCAGAGCTACAGATCAGCTTCATGGAACACATCGCCATGCCCATCTACAAGCTGCTGTCAGAGCTGTTACCAGGGGCAACCGAGCTGTATGAGCGTGTAGCGACCAATCGAGTACAGTGGACCAAAGTCTCCCACAAGTTCAGCGTCCGTGGGTTGCCTAGCAACAATAGCCTCGACTTCCTGGATGAAGAATATGAATTGCTGCAATCCCAGGGTGCACTTGGGGATGACAGCCACTGCGATGACACCCATTGCCTCAACGGTTGCCTGGATGAGGGGGACGGGGGGAGGGGCCTGTAACCATACTGACCAATGGGAGTGGAGAAAGCAGTATCTCTAGGCTAATAGAAACCTAAGGAAACTATTCCCTTTTTACGTCCTCATGCGGAGAAGGCGGGACTCTGAGACAGTTTGACATTTGACTGACAGCTGTCAATCTCTAAGGCTGAGCAAAACAGATGGAGTGAACCGCAGGAGTGACGATTCAGATGAGTCATTTCAAAGGAGTCGATTCAGACTAGTCGATTCAGACGATTCCTGTAGATGCTAAATGTGACTGAACTCctgtgaggaaaggagagagtcGTGTTGACTCTGGAAATGATCATTTTCATAACGAGGTCTCCGTTCATATTCTTCTGAGTTTCTGtttcacacacagactcacagacaccTAATAGGTCAATACCCGTGTAATAACACATAGGTAAAGAGCTCCTTTCCTAGTTAACAGAAAGCTGTGTAGTACGAAGGACAGTTCTGGAATCTGTTGGTTTATGTTGTTTTAAGATCATCAGAATCCCTCCCATCAGCCCACACACACCCTGATGAGCTGCTATGTCACTCATATGACTGCTTATGTATACTGTATGCAGCCTACACCTTGTGTGTTACACCCTTTATCTCAGCCAGTATTGGATGTATTTTTCATGTCTTAGGCATCATGTAAGTCTCTAGTTTGCCAGATGTTATATTTGTTATTATATATGGAGCCCATTGGTGGCCCTGCGATGCCCAGTGGTCATTGAGGGAAACTGAATCTGCCTTGTGTCAGGTAATGTGAGTGGAACTTCCCTCTTTTGGAAATGGGGACAGTTTGACAGTCAATGATCACTGGTCAGTGCCATCCTCATTAGCTAAAATCTTCTATCCCTggagtgcgcacacacacacacagacacacacacacacagacatacacacagacaccacaaccACCATTACAACCTTCACAACAAGAGCCACTAAGAGCCATTCCTCCTTTCTTCTTAgtgttcctctctgtgtctctatataaCCCCTACAACCCGCTATATAAGTGAAGCCCTTGAAATGATCCAGTGTCatcatacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgccttaTCGTGCTATGCTGCCTTTCTCAGAGCTTGCCATGTTGGACCATAGATACAAACAGACACAGAGGCCAAACAGTATCTCCAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTGTAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTGTAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGACAGTGTGTTGATGAACAGACCTATAGATGATAGTGTGTCGGTTAACAGTGTGTTGGTTATCAGTGTGTTGGTTATCATTGTGTTGGTTAACAGTGTGTTGGTTATCATTGTGTTGGTTAACAGTGAGTTCACTGTCTCAGGAGTTTAAAACACACTACCACTCAACTCCAATCAATCAGTCACCTAAATGTTAAACTAATGTGTGAAACTGCTGCTCGGTGAAGCCAGAGCAACAGCTTAGCCTCACCACATGTCAGGgcttacatactgtatatgtggAAGAATTAAGGCCATACAGGTCAATATATTTGTTAAAAGGGCGTACAGGTCAATATATTTGTTAGGTAAATGAACTGGGGATATTGGTTAGGTGACAGGGGCGTACAGGTCAATATATTTGTTAGGTGAATGAACTGGGGATCTTGGTTAGGTGACAGGGGCGTACAGGTCAATATATTTGTTAGGTGAGTGGGCTATAGGTGAATATATGGATGGACTGCATATAGCTTCATATATTTTGTAGATGATTCTCCCTcaggatgtctgtgtgtgtgacttcaCTGACTTTGACTTCATGTTATTGTACAGATTGTAACTGTTCTATTGGCATTCAGGTAGGCTAGCGATCTGAAGCCTCGCTCTAGTGCTGTATACCTGTGAACTCTGACCCCTGATGAACACAGATTAACTTCCTCTTTtcccctgttgttgttgttgttgttgttttccgcCCATCCATTCCAGATCTGCCTTCTTCATATGtattttgatgatgatgatgcagaAACTCTGATGTAAATACAGTCTGCTCTTAAATTATTACTTTAGACAGTTGTCTCTCTTAACTTTGTTTTACGTTAGTGTGTTTGTGTCAACGAGTCAGGGCTCCGTCATGTGCCAATCTCCATCTCCACGGAAACGCAGGATTCTTACCTGTGATGTAATCTCATAGGCTATATATAAATGCTGTAAATAACAGTTTATGAAGTGTTACTTGATTCTATGTAATTATTACAATGAGGACTATTTTAATTATTTCatgttatacagttgaagtcggaagtttgcagacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatatagttttggcaagtcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377194 lncRNA upstream 691 37014509 ~ 37030470 (+) True G2079091
TU2377180 lncRNA upstream 48198 36982763 ~ 36982963 (+) True G2079078
TU2377178 lncRNA upstream 50419 36980523 ~ 36980742 (+) True G2079076
TU2377173 lncRNA upstream 59166 36971747 ~ 36971995 (+) True G2079071
TU2377171 lncRNA upstream 60640 36970322 ~ 36970521 (+) True G2079069
TU2377330 lncRNA downstream 2627 37277709 ~ 37278966 (+) False G2079194
TU2377331 lncRNA downstream 2627 37277709 ~ 37278966 (+) True G2079194
TU2377348 lncRNA downstream 32213 37307295 ~ 37307932 (+) True G2079207
TU2377358 lncRNA downstream 46487 37321569 ~ 37323327 (+) False G2079213
TU2377359 lncRNA downstream 46487 37321569 ~ 37323015 (+) False G2079213
XM_036965234.1 mRNA upstream 167194 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 167194 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 167194 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 167194 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 181143 36707926 ~ 36850018 (+) False LOC110507948
XM_036965198.1 mRNA downstream 43634 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 230479 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 230647 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 261447 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA downstream 277632 37552714 ~ 37568873 (+) True LOC110508012
TU2376553 other upstream 591807 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 729119 36300938 ~ 36302042 (+) False G2078493
TU2377335 other downstream 4023 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 91657 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 540796 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 540796 37815878 ~ 37819286 (+) True G2079657
TU2378436 other downstream 669850 37944932 ~ 37945151 (+) True G2080014

Expression Profile