RNA id: TU2377173


Basic Information

Item Value
RNA id TU2377173
length 249
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2079071
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36971747 ~ 36971995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGCCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGCCTGGCAGTAACACTGTCTGGCAGTAACACTGTCTGGCAGTAACACTGCCTGGCAGTAACACTGTCTGGCAGTAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377171 lncRNA upstream 1226 36970322 ~ 36970521 (+) True G2079069
TU2377168 lncRNA upstream 5414 36966103 ~ 36966333 (+) True G2079066
TU2377167 lncRNA upstream 6124 36965399 ~ 36965623 (+) True G2079065
TU2377166 lncRNA upstream 6944 36964494 ~ 36964803 (+) True G2079064
TU2377159 lncRNA upstream 18859 36952376 ~ 36952888 (+) True G2079057
TU2377178 lncRNA downstream 8528 36980523 ~ 36980742 (+) True G2079076
TU2377180 lncRNA downstream 10768 36982763 ~ 36982963 (+) True G2079078
TU2377194 lncRNA downstream 42514 37014509 ~ 37030470 (+) True G2079091
TU2377197 lncRNA downstream 61268 37033263 ~ 37033473 (+) True G2079093
TU2377207 lncRNA downstream 86087 37058082 ~ 37058363 (+) True G2079102
XM_036965234.1 mRNA upstream 107780 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 107780 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 107780 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 107780 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 121729 36707926 ~ 36850018 (+) False LOC110507948
XM_036964740.1 mRNA downstream 59166 37031161 ~ 37275082 (+) False LOC110536894
XM_036965198.1 mRNA downstream 346721 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 533566 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 533734 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 564534 37536529 ~ 37568873 (+) False LOC110508012
TU2376553 other upstream 532393 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 669705 36300938 ~ 36302042 (+) False G2078493
TU2377138 other downstream 301491 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 307110 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 394744 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 843883 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 843883 37815878 ~ 37819286 (+) True G2079657

Expression Profile