RNA id: TU2377166


Basic Information

Item Value
RNA id TU2377166
length 310
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2079064
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36964494 ~ 36964803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtttcacagagtcgtggctgaacgatgacattaagaacatacagctggcaggttatacaccctatcagcaggatagaacagcagcctctggtaagacatgggGCTGGGGGCCTATCCATAtatgtaaacagctggtgcacgatatctaaggaagtctcgaggttttgctcacctgaggtagagtatctcatgataagctgtagaccacactatctacatggagagttctcatctgtatttttcgtagctgtctacataccacaacagaccgatgctggcactaaaaccgcactaaATAACCTATATAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377159 lncRNA upstream 11606 36952376 ~ 36952888 (+) True G2079057
TU2377157 lncRNA upstream 13631 36950463 ~ 36950863 (+) True G2079055
TU2377129 lncRNA upstream 22458 36882307 ~ 36942036 (+) True G2079027
TU2377114 lncRNA upstream 111358 36852786 ~ 36853136 (+) True G2079016
TU2377102 lncRNA upstream 151204 36807437 ~ 36813290 (+) True G2079009
TU2377167 lncRNA downstream 596 36965399 ~ 36965623 (+) True G2079065
TU2377168 lncRNA downstream 1300 36966103 ~ 36966333 (+) True G2079066
TU2377171 lncRNA downstream 5519 36970322 ~ 36970521 (+) True G2079069
TU2377173 lncRNA downstream 6944 36971747 ~ 36971995 (+) True G2079071
TU2377178 lncRNA downstream 15720 36980523 ~ 36980742 (+) True G2079076
XM_036965234.1 mRNA upstream 100527 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 100527 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 100527 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 100527 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 114476 36707926 ~ 36850018 (+) False LOC110507948
XM_036964740.1 mRNA downstream 66358 37031161 ~ 37275082 (+) False LOC110536894
XM_036965198.1 mRNA downstream 353913 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 540758 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 540926 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 571726 37536529 ~ 37568873 (+) False LOC110508012
TU2376553 other upstream 525140 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 662452 36300938 ~ 36302042 (+) False G2078493
TU2377138 other downstream 308683 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 314302 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 401936 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 851075 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 851075 37815878 ~ 37819286 (+) True G2079657

Expression Profile