RNA id: TU2377159


Basic Information

Item Value
RNA id TU2377159
length 298
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2079057
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36952376 ~ 36952888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgtcttcctaaCCTAGCtgggcatctctctctctagtctgtctgtcttcctaacctagctgtccatctctctctctagtctgtctgtcttcctaacctagctgtccatctctctctctagtctgtctgtcttcctaaCCTAGCTGGGCAGTGCATGTctctctagtctgtctgtcttcctaacctagctgtccatctctctctctagtctgtctgtcttcctaaCCTAGCTGGGCAGTGCATGTctctctagtctgtctgtcttcctaacctagctgtccatctctctctctagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377157 lncRNA upstream 1513 36950463 ~ 36950863 (+) True G2079055
TU2377129 lncRNA upstream 10340 36882307 ~ 36942036 (+) True G2079027
TU2377092 lncRNA upstream 70129 36787525 ~ 36882247 (+) True G2079003
TU2377166 lncRNA downstream 11606 36964494 ~ 36964803 (+) True G2079064
TU2377167 lncRNA downstream 12511 36965399 ~ 36965623 (+) True G2079065
TU2377168 lncRNA downstream 13215 36966103 ~ 36966333 (+) True G2079066
TU2377171 lncRNA downstream 17434 36970322 ~ 36970521 (+) True G2079069
TU2377173 lncRNA downstream 18859 36971747 ~ 36971995 (+) True G2079071
XM_036965234.1 mRNA upstream 88409 36707926 ~ 36863967 (+) False LOC110507948
XM_036965235.1 mRNA upstream 88409 36707926 ~ 36863967 (+) False LOC110507948
XM_036965236.1 mRNA upstream 88409 36707926 ~ 36863967 (+) False LOC110507948
XM_036965238.1 mRNA upstream 88409 36736717 ~ 36863967 (+) True LOC110507948
XM_036965237.1 mRNA upstream 102358 36707926 ~ 36850018 (+) False LOC110507948
XM_036964740.1 mRNA downstream 78273 37031161 ~ 37275082 (+) False LOC110536894
XM_036965198.1 mRNA downstream 365828 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 552673 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 552841 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 583641 37536529 ~ 37568873 (+) False LOC110508012
TU2376553 other upstream 513022 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 650334 36300938 ~ 36302042 (+) False G2078493
TU2377138 other downstream 320598 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 326217 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 413851 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 862990 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 862990 37815878 ~ 37819286 (+) True G2079657

Expression Profile