G2079003


Basic Information

Item Value
gene id G2079003
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36784715 ~ 36882247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2377085
GGACTTCCCTGTCCATGAGACGAGAACAACATGCTCTCGTGTTTGTCTATAAAGCACTTCTGAATAAACTACCTTCTTATTTATCATCACTCATCAATATTAGAAGTAGAATTCCTAAAACCAGGTCTCAAGCTTGGATTACACTTGAGGCCCATGCggtttccacagagttgggtatggctgccttttcctgttTACGCTCCTTGCCTGTGGAATAGCCTGCAGTCTAAACTTAAACTTCAGACTCTTGTCGCCCATCagatacccctccagtatctataGTATACCCCTCTGGTATCTACAGTATACTCATCCAGTATCCACAGTATACCCCTCTGGTATCTACAGTATACtcctccagtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccagtatccatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacggtatacccctccggtatctacggtatacccctccagtatctacagtatacccctccagtatccatacccctccagtatctacagtatacccctccagtgtctacagtatacccctccagtgtctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacccctccagtgtctacagtatacccctccagtatctacagtatacccctccagtatctacacTATACCCctctagtatctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacctctCCGGTATCTACAGTTTACTCCTCCAGTATCCATACcactccagtatctacagtatacccctccagtatctacagtatacccctccagtgtctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacccctctagtatccatacccctccagtatctacagtatacccctctagtatctacagtacacccctctagtatctacagtatacccctccggtatctacagtatacccctccagtatccatacccctccagtgtctacagtatacccctccggtatctacagtatacccctccggtatctacagtatactcctccagtatctacagtatacccctccagtatccatacccctccagtatctacagtatacccctccggtatctacagtatactcctccggtatctacagtatacccctctagtatctacagtatacccctctagtatctacagtatacccctctagtatctacagtatactcctccggtatctacagtatactcctccggtatctacagtatacccctccggtatctacagtatacctctccggtatctacagtatacccctctagtatctacagtatacccctccggtatctacagtatacctctccggtatctacagtatactcCTCCAGTATCCatacccctccagtatctacagtatacctctccggtatctacagtatactcCTCCAGTATCCATACcactccagtatctacagtatacccctccagtatctacagtatacccctccagtatccatacccctccagtgtctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacggtatacccctccggtatctacggtatacccctccggtatctacagtatacccctccagtatctacagtatacccctccggtatctacagtatactcctccggtatctacagtatacccctctagtatctacagtatacccctctagtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacctctccggtatctacagtatac
>TU2377093
GGACTTCCCTGTCCATGAGACGAGAACAACATGCTCTCGTGTTTGTCTATAAAGCACTTCTGAATAAACTACCTTCTTATTTATCATCACTCATCAATATTAGAAGTAGAATTCCTAAAACCAGGTCTCAAGCTTGGATTACACTTGAGGCCCATGCggtttccacagagttgggtatggctgccttttcctgttTACGCTCCTTGCCTGTGGAATAGCCTGCAGTCTAAACTTAAACTTCAGACTCTTGTCGCCCATCagatacccctccagtatctataGTATACCCCTCTGGTATCTACAGTATACTCATCCAGTATCCACAGTATACCCCTCTGGTATCTACAGTATACtcctccagtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctctagtatctacagtatacccctccggtatctacggtatacccctccggtatctacggtatacccctccagtatctacagtatacccctccagtatccaTACCCctccactatctacagtatacccctccggtatctacggtatacccctccagtatctacagtatacccctccagtatccatacccctccagtgtctacagtatacccctccggtatctacagtatacccctccggtatctacagtatacccctccggtatctacggtatacccctccagtatctacagtatacccctccagtatccataccactccagtatctacagt
>TU2377092
ctctagtatctacagtatactccTCCAGTATccatacccctccagtatctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacccctctagtatccatacccctccagtatctacagtatacccctccagtgtctacagtatacccctccagtgtctacagtatacccctccagtgtctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacccctccggtatctacagtatactcCTCCAGTATCCATACCCctctagtatctacagtatacccctccagtatctacagtatacctctCCAGTATCCATACCCCTCCAgtgtctacagtatacccctccagtatctacagtatacccctccagtatctacagtatacccctccagtatccatacccctccagtatctacagtatacccctccaagatctacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2377085 False 1958 lncRNA 0.46 6 36784715 36792904
TU2377093 False 774 lncRNA 0.47 5 36784715 36790010
TU2377092 True 474 lncRNA 0.47 2 36787525 36882247

Neighbor

gene id symbol gene type direction distance location
LOC118936607 LOC106581404 coding upstream 81192 36678773 ~ 36703523 (+)
LOC118944683 NA coding upstream 165989 36610735 ~ 36618726 (+)
LOC110507218 LOC106591049 coding upstream 238218 36453761 ~ 36546497 (+)
LOC110508005 LOC106613226 coding upstream 344006 36438225 ~ 36440709 (+)
naalad2 LOC106581411 coding upstream 403704 36365655 ~ 36381011 (+)
LOC110536894 NA coding downstream 148914 37031161 ~ 37276857 (+)
mre11a mre11a coding downstream 436469 37318716 ~ 37357606 (+)
trnat-agu-151 NA coding downstream 623314 37505561 ~ 37505634 (+)
trnat-agu-152 NA coding downstream 623482 37505729 ~ 37505802 (+)
LOC110508012 LOC106581399 coding downstream 654282 37536529 ~ 37568873 (+)
G2079000 NA non-coding upstream 6597 36777822 ~ 36778118 (+)
G2078999 NA non-coding upstream 6899 36776612 ~ 36777816 (+)
G2078997 NA non-coding upstream 10833 36773595 ~ 36773882 (+)
G2078995 NA non-coding upstream 15681 36768112 ~ 36769034 (+)
G2078994 NA non-coding upstream 18143 36762114 ~ 36766572 (+)
G2079027 NA non-coding downstream 60 36882307 ~ 36942036 (+)
G2079055 NA non-coding downstream 68216 36950463 ~ 36950863 (+)
G2079057 NA non-coding downstream 70129 36952376 ~ 36952888 (+)
G2079064 NA non-coding downstream 82247 36964494 ~ 36964803 (+)
G2079065 NA non-coding downstream 83152 36965399 ~ 36965623 (+)
G2078493 NA other upstream 482673 36263506 ~ 36302664 (+)
G2078425 NA other upstream 680614 36102874 ~ 36104101 (+)
G2078382 NA other upstream 750716 36033285 ~ 36033999 (+)
G2078296 NA other upstream 852206 35932115 ~ 35932509 (+)
G2079197 NA other downstream 396858 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 484492 37366739 ~ 37368136 (+)
G2079657 NA other downstream 933631 37815848 ~ 37819286 (+)
G2080014 NA other downstream 1062685 37944932 ~ 37945151 (+)

Expression


Co-expression Network