RNA id: LOC110507217


Basic Information

Item Value
RNA id LOC110507217
length 1618
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110507217
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 38469918 ~ 38474599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCACACCACGCCACACCACGCTACAGCACGCTACAGCACGCCACAGCACGCCACACCACGCCACACCACGCCACGCCACACCACTCCACACCACACcacgccacaccacaccacaccacgctACAGCACGCTACAGCACGCTACAGCACGCCACACCACGCTACAGCAGGCCACACCACGCTACAGCacgtcacaccacaccacaccacgctACAGcacgccacaccacaccacaccacgctACAGCAGGCCACACCACGCTACAGCATGCCACACCACACCACGCTACAGCACGCCACACCACACCACGCTACAGcacgccacaccacaccacaccacgctACAGCACGCCACACCACGCTACAGCACGCCACACCTCGCTACAACACGCCACACcacgccacaccacaccacaGGTTCTGTGGAGTTGAGATGTGGAACCCCAACAGCAAGATGAGTGAAGACTGTCTCTACCTCAACATATGGACTCGTCCCCAAATGAACACACCCTAAACGTTCCAAGAGCTCCTCCCCTGGTTCCTCATTGGCTCCTGTCATGATGTGGCTCTATGGGGGTGTTTTCACTACAGGCACTGTCCTGGAACTATGAAGTGAAACTAATATACTTATATTTATGTTTGCAATGTACACCAATAATAAAGTTTGTTTTGATTGGACACAGGCTCGGTCCGTTGTATTTCCAGTCTCTTCCTGATAGCGAGGTTGTCCGTGGCGATGATGGAATGCATGACCAGCGCGTGGCTCTGTACTGGGTAGCCAATAACATCACTGCCTTTGGCAGAGACCCTTCAAAAGTTACATTAATCTCCTTTTTTATGTTGGCTGCATCTGTGggtctccatctcctctcccctggcAGCCATGGTCTGTTCAACAGGGCGAAACTACAGAGTGGTTCCCCTAACACTCCATTGGCTGTCATGACTCAACAGCAGGCCTGGAACAGGACCCTGTCCCTGGGTAGGCTGATGGGTTTGTCCCCTGACACCTCTGGCTGTCCTGGAGCAGTGTCTACAGAGAGAATATCATCAAACAGCAGTACACTGTCCTGTCTCTCCCCGCACTCATAGCATTGCCATTCACCCCTTCTGTCGACCAAGACTTTCTACCAGACATGCCCGAGATTATGCTCCGGACGGGCAACTTCCTGAAGACAGAGGTGCTGATTGGTTCGAACCAAGATGAGTGGACCCACTTCCTGGTTTACGGGGCACGGGGATATGACATCACTAGCCAGAGCCTGATCAGCAGGGAGGACTTCCTGAAAGGGGTGGACCTAGTGTTTATGGGGTTTGGTGATGTCACAAGGGAGATGGCCATCTTCCAGTACATTTGTAATGAACTCTCTGATCATCACCATACCTACACGCAGAACacgagggggggggagggggagggtaaGGCCTGCCTCTTCCTGTTTGACCACCACTCCTCCAACAATCCCTGGCCGGTGTGGATGGGCGTGATGCAAGGCTATGAGATTGCGTTTATCTTTGGAATGCCGCTGCACAGTTCCCTGGGATACATAGAGGAGGAAGTGGTCATGAGCAGGAGGATGATGAAGTCCTGGGCCAACATGGGTAGGACCGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2379065 lncRNA upstream 20595 38449088 ~ 38449323 (+) True G2080616
TU2379062 lncRNA upstream 21559 38448135 ~ 38448359 (+) True G2080613
TU2379058 lncRNA upstream 25802 38443787 ~ 38444116 (+) True G2080609
TU2379000 lncRNA upstream 69656 38400054 ~ 38400262 (+) True G2080551
TU2378974 lncRNA upstream 90955 38378585 ~ 38378963 (+) True G2080525
TU2379229 lncRNA downstream 111403 38586002 ~ 38586307 (+) True G2080751
TU2379234 lncRNA downstream 114766 38589365 ~ 38589588 (+) True G2080756
TU2379242 lncRNA downstream 121077 38595676 ~ 38595981 (+) True G2080763
TU2379259 lncRNA downstream 132221 38606820 ~ 38607162 (+) True G2080777
TU2379262 lncRNA downstream 138176 38612775 ~ 38613164 (+) True G2080780
XM_021588455.2 mRNA upstream 409805 38052633 ~ 38060113 (+) True LOC110508017
XM_036965780.1 mRNA upstream 901045 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA upstream 901045 37552714 ~ 37568873 (+) True LOC110508012
trnat-agu-152 mRNA upstream 964116 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 964284 37505561 ~ 37505634 (+) True trnat-agu-151
XM_021588440.2 mRNA downstream 144951 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 564974 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 1193390 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA downstream 1193405 39668004 ~ 39680132 (+) True LOC110508028
XM_036964981.1 mRNA downstream 1219962 39694561 ~ 39701212 (+) True LOC110507222
TU2378436 other upstream 524767 37944932 ~ 37945151 (+) True G2080014
TU2377942 other upstream 650632 37815878 ~ 37819286 (+) False G2079657
TU2377944 other upstream 650632 37815878 ~ 37819286 (+) True G2079657
TU2377712 other upstream 1101782 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 1189086 37279105 ~ 37280832 (+) True G2079197
TU2380510 other downstream 1353059 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 1421068 39895667 ~ 39913078 (+) False LOC110507223
TU2380578 other downstream 1457275 39931874 ~ 39933835 (+) True G2081949
TU2380828 other downstream 1482616 39957215 ~ 39957751 (+) True G2082162
TU2381755 other downstream 2368915 40843514 ~ 40844780 (+) False LOC110508042

Expression Profile