RNA id: TU2433750


Basic Information

Item Value
RNA id TU2433750
length 274
lncRNA type sense_over
GC content 0.51
exon number 1
gene id LOC110508974
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31933762 ~ 31935806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGCCTTGCAAAAGTGGCTCGCCAATCAACTTCACGTCCGAAGTGGCTAAATTCTACAGCGGACTTCAGATTGTTTCAGCGACAGATGGACAATTCGCCTTTCTGATTCCAAGCGCGGCCCTTGCGCAAATGAGCGTGCCAAACGCCCTACATGGCAATCCAACAGTTGCGGTGGCGGTGTCACCTGTTGCACCTCCCATCACTGCAGACTCCGTGTGGAGACCATGGTAGGGTCATTAGACTGAAGGACTTTTATGCACCATAACACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433581 lncRNA upstream 12558 31922097 ~ 31922749 (+) True G2128456
TU2433579 lncRNA upstream 13552 31921254 ~ 31921755 (+) True LOC110508972
TU2433577 lncRNA upstream 15275 31918247 ~ 31920032 (+) False LOC110508972
TU2433650 lncRNA upstream 52210 31882752 ~ 31883097 (+) True G2128516
TU2433615 lncRNA upstream 107464 31826074 ~ 31827843 (+) False G2128482
TU2433759 lncRNA downstream 9584 31945164 ~ 31948898 (+) True G2128614
TU2433813 lncRNA downstream 99241 32034821 ~ 32037428 (+) True G2128653
TU2433856 lncRNA downstream 139415 32074995 ~ 32075781 (+) False G2128680
TU2433857 lncRNA downstream 139415 32074995 ~ 32075781 (+) False G2128680
TU2433858 lncRNA downstream 139415 32074995 ~ 32075781 (+) False G2128680
XM_021589906.2 mRNA upstream 14359 31880157 ~ 31920948 (+) False LOC110508972
XM_021589908.2 mRNA upstream 14359 31880158 ~ 31920948 (+) False LOC110508972
XM_021589909.2 mRNA upstream 14359 31880158 ~ 31920948 (+) False LOC110508972
XM_021589907.2 mRNA upstream 14359 31880478 ~ 31920948 (+) False LOC110508972
XR_005040205.1 mRNA upstream 23105 31880157 ~ 31912202 (+) False LOC110508972
XM_021589913.2 mRNA downstream 22055 31957635 ~ 31961212 (+) True cldn1
XM_021589914.2 mRNA downstream 79566 32015146 ~ 32020881 (+) True LOC110508980
XM_021589915.2 mRNA downstream 94009 32029589 ~ 32032860 (+) True LOC110508981
XR_002471382.2 mRNA downstream 117651 32053231 ~ 32054953 (+) False LOC110508984
XM_021589920.2 mRNA downstream 152072 32087652 ~ 32098796 (+) True LOC110508986
TU2433251 other upstream 195237 31739312 ~ 31740070 (+) True G2128189
TU2433149 other upstream 291845 31640302 ~ 31643462 (+) False LOC110508221
TU2433148 other upstream 291971 31640302 ~ 31643336 (+) False LOC110508221
TU2432265 other upstream 1294064 30640687 ~ 30641243 (+) True G2127299
TU2432201 other upstream 1366729 30534851 ~ 30568578 (+) True kcnn1a
TU2433758 other downstream 9584 31945164 ~ 31948302 (+) False G2128614
TU2433827 other downstream 118096 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other downstream 118189 32053769 ~ 32054943 (+) False LOC110508984
TU2433828 other downstream 118189 32053769 ~ 32055091 (+) False LOC110508984
TU2433832 other downstream 118189 32053769 ~ 32055655 (+) True LOC110508984

Expression Profile