RNA id: XM_021589906.2


Basic Information

Item Value
RNA id XM_021589906.2
length 6858
RNA type mRNA
GC content 0.48
exon number 33
gene id LOC110508972
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31880157 ~ 31921755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGGGGGTTTGACGGCGATAGGAAAGAATAAGATAATGAGAGAAAATAGGCGTACGCAAAATGTGTCCTCACATCCTGTTTTTCACTTCCTCCTCAATGGTCGTGAATGAACCAGTTTCGGACGGTCTGTATGCGCATGGAATATACCACAGCACATTGTCAATATTGCACACGCGCCCTTTCTGTGGACACTTTACAGGCCACATAAATTGTAGAAGACATTTGTGCGCGGTGAAATTCTGAATCCGTATTTTTCCCGCAATATGAGTGATTTCTGATAGCAAGAGGCCAGAGGGTTCTGTGGGACCTTTAAACACTTCTGACAGGATGGAGAAGAAAGACGTGAAGATCATCAACCAGGGCCTGGAGGACGAGATGGAGGTGTGGGGTTACCGGCCGTGCCCCTGGAAGATGGTTCTGGTGGCCGTTGGGGCGGTGTGCACCGGGGGGCTGCTGTTTCTGGTGCTCTACTGGCTGCCTGAGTGGGGAGTGAGACTGACCTGCACACGGACCCCCTTCATCAGGGAGTCCCAGACACTGCTGCTAAGATCCACGGACGAGTTTAGGAGATGGTTCCGGGCCAAGGTACATGTGATGCTAGCCCCTGGAAAGAGACCCTTTGACGGTGTCGATCTCCTAAGCCCTCTGCACATACCTAATGGGGACAGTATACACTCCTTCAGTGCCCTCCAAGATGAACTTCAGGGAAAATACATCCATATCCAGCCAGTTCAGGTTTGCTACTTCACCCACCACAGCACAAAATACTACTGGAATGATCTGCTTCAGAATTTTGAAGTGTTTAAAGGTTTGGAGGATGTCAGGGTGACTTGTTCCAGCATCCACACCGACCACAGCTCTGGTCTCAGCAAACTACTTCAGGACTACAGGAGACTGTTCTTTGAAGTGAATGAGATAGCAGTTAAGGTGCCATCTGTGTTCAAGCTACTCATAAAAGAGGTCCTGAATCCGTTCTACATATTCCAGCTCTTCAGCGTGATTCTGTGGAGCATTGAACAGTATTACTACTACGCCGCTGCCATAGTCTTCATGTCTGTCATATCCATAGCTACCTCGCTGTACACCGTCAAGAAGCAATACATCATGCTGCATGACATGGTGGCGACACACAGTGTCGTACGTGTCTCAGTGTGCAGAGGGACTCTAGATGTCGAGGAGGCCATGTCCACAGAGCTGGTCCCCGGTGATGTCATCGTCATCCCGTCCAATGGAATGATCATGCCCTGTGACGCCGTGCTGATTCATGGAAACTGCATCGTCAACGAGAGCATGCTGACAGGTGAGAGTGTGCCTGTCACCAAGACCAGCCTACCCAGCTCAGGAGAAGATGGGGCTGGCGTCTATAGCATAGAGGAACACAAGAGACACACGctgttctgtggcactcacatcATTCAGACCCGCTTCTACACCGGGGAACTGGTCAAGGCCGTGGTGGTCAGGACTGGTTTCAGCACAGAGAAGGGCCAGCTGGTGCGCTCCATCCTGTACCCCAAGCCCACTGACTTCAAGCTGTACAGAGATGCCTATCTCTTCCTGCTCTGTCTGGTGGGAGTGGCCGGCATTGGCTTCATCTACACCATCGTCCTCAGCATCATAAACCAGGTTCCAGCCAAAACCATAGTGGTTGAATCTCTGGACATTATCACCATCACGGTGCCCCCGGCGCTGCCTGCAGCCATGACAGCTGGCATCGTCTATGCCCAGCGCCGGCTGAAACGTGTGGGTATCTTCTGCATCAGTCCCCAGAGGATCAACATCTGTGGCCAACTCAACCTCATCTGCTTCGACAAGACTGGTACTCTCACTGAAGATGGTTTGGACCTTTGGGGGATCCAGAGAGTTGAAAATGGCAGtttctctccccCAGAGGATGACCCAGCCAATGAGACACTAGTCAGGTCCTCGTTTGTGTCTTGCATGGCCACCTGCCACTCTCTGACCAAGCTAGAGGGAGAACTCTCCGGAGACCCAATGGACCTCAAGATGTTCAACGCTACAGGCTGGATTCTAGAGGAGCCAACAGAGGAAGAAACAGCCCTCCACAATCCCATAATGCCCACCGTGGTGCGGCCACCCAAACAGGTGCTCCCAGAGGTCAACCAGGAAGTCAATCTAGCACAGAACATGGAGCTGTCTGAGCTGACGTTGTCCTATGAGATTGGGATCGTCCGCCAGTTTCCTTTCTCGTCAGCTCTACAGAGGATGAGTGTGGTGGTCCGGAAGCTGGGGGAGAAGCGCATGGACGCCTACCTCAAGGGGGCGCCAGAGGTTGTGGCCAGCCTCTGCGCAGAGGACACAATACCAGAGAGCTTCACAGAGACCTTGGAGTTTTACACCAGGCAGGGGTTCAGAGTCATAGCTTTGGCCCATCGCCAGCTGGAGGCCAAACTCTCCTGGCACAAGGTCCAGAACCTCAACAGAGATCTCATAGAGACCAATATGGAGTTCCTTGGGCTCATAATCATGCAAAACAAGCTAAAGGAAGAGACTTCTGGGGTTTTAAAAGACCTGCGACATGCAAACATCCGCACTGTGATGGTTACAGGCGATAATATGCTAACCGCTATATCAGTAGCCAGAGACTGTGGGATGATAACCCCTCATGAGAGGGTCATCGTAGCAGACGCCACACCTCCCAAAGACATCCAGCCTGCTACGATCAATTGGCACTACACAGAGAACCACGCCACCAGCAAAGACAACTGTGTTGAGTCAGTGGAAATCAGCCTTGACGATGTGGGCCATGTGGCTTATGGTGAGCAGCACAAGCAGCAGGAGCAGGGCTACCACTTTGCCATGAGTGGCAGGTCCTTTGCTGTCATCACCGAACACTTCCCTGACCTAGTCCAAAAGCTGGCACTGCATTCCACAATATTCGCCCGCATGGCTCCTGACCAGAAGACCCAGCTGGTAGAGGTCCTACAGAGTGTGGACTATACTGTAGGGATGTGTGGTGATGGTGCCAATGACTGTGGCGCCCTAAAGAGAGCTCACAGTGGGATCTCTCTGTCAGAGCTGGAGGCCTCGGTCGCCTCCCCCTTCACCTCCTCCACGGCCAACATTTCCTGTGTGCCCAACCTCATTAGagaggggagagctgCTCTCATCACCTCCTTCTGTGTGTTCAAGTTCATGGCCCTGTACAGCATCATCCAGTACCTCAGTGTCACGCTCCTCTACTCTATCCTCAGCAACCTGGGAGACTTCCAGTTCCTCTTCATTGACGTTGCTATCATTCTGATCATTGCCTTCACAATGAGTCTGAACCCGGCGTGGAAGGTTCTGGTGGCGCAGCGCCCCCCGTCCAGTCTAATCTCAGGCCCTCTGCTGTTCTCCGTGCTGACCCAGATCCTCACCTGTCTGGCCTTCCAGGTCCTGGCCTTCCTCTGGGTCCGGGGCCAGAACTGGTACGAGAAATGGACTCCCCTCTCAGATGCTTGTAATGTTTCCAGTGCCAATCTCACCCATGGTCCCAACATAACGTCACATGTCGACCACAAGAACATCAGGAACTATGAGAACACTACACTCTTCTACGTCTCCTCCTTCCAGTACCTGGCAGTGGCCATCATCTTCTCCAAGGGAAAACCTTTCAGACAGCCAAGCTATAAAAACTGGCCGTTCATGCTATCCTGCATGGCTCTGTACATATTCCTCTTCATGATCATGCTGTATCCTGTTCCTGCCATCGACAATTTCCTGGAGATTGTGTGTGTTCCCCATGAATGGCGCATAACAGTGGTCATCATTGTCCTAGTGAACGCTGCTGTGTCTTTCCTATTGGAGACTTTGGTCCTTGACATCATCTTATGGAAGCTGGTGTTCAGTCGAGACAAGCAGGGGGGCAGCGATGGCATGGCCGTCACCTCCGCTACTCTCACACCTCAGTCTGCTAATGAGCGTTGGTGCACGGCGTTCCTCTCCTGGCTGTTCTGTCGGAAGGGGAAGACCCCCAGAGTGCGCTACATGCAAGTCGCCCAGGAGCTGCAGGAGGACCCCGACTGGCCCCCCAAACCTGCTACCGTCACCTACACCACCAGCACCCCCCACCACACTGTCAGCATGTGACACATGGCCACACCCACATATAgctgcaaaaaaatatatttaatcaggcatgtcagttaataacaaattcttatttacaatgacggcctaccctggccaaaccctcccctaacccggacgacgctgggccaattgtgcgccgccctatggtactcctgatcatggccagttgtgatacagtctgggatcgaaccagggtctccAGTGATGccactagcactgagatgcagtgtcttagaccactgtgcaaCTCGGGAGGCATACAGTACCCAGTCTAGAACCTTCCATTCCCCGGACCAGGTTTATAACCAGTATCAAGTATAGTACCTTCCTTTGCCTGGACAAGTAGGGCTGTGATGATACCAGTATAgcaatattttttccatggcaaaaatgaaaacatgaagcagaccaaactcttaggtattttaaaaacctgctgtaagTAAAATATTGTCTGCAATAGGCAGGTTGGTTGTTAAGTAACAAAACGGACGCGTGCGTAACTATGAGGAAAAACAGatgggttggcttagattgttgacaacatgtcaactatatttattctccaatgtttattgaaaaccaAAAtccatttgcacaatgagcacttgtctctcaaatacattgtaacagttgttagctagctagcgaatttgagccatattagcattgacatgaaatcagtcaaaacacctcaaaacaagacatgaaactagctgaaatgaatcacttgcgattccccacatggcagtttcttgtaATTGTTGGTATCTATCtagccatccagaatcacaacaacgcAGACTTCTGCCCCATTTGATGTGTGTGCATCGTTTTCGTGACattgtcagctaacccatctatagctaggaaaataaataaatgtgactccaACAtaagggctgttttcctaaagaagttaaatctgcTTCGTTTTTCCTATCCAAGATAATAACAAGTATCGCAATACTGATATCGTCCCGTCCCTAGTTTATAACCAATATCGAGTCTAGAAACTTCCATTGCCTGGACAACTGACCTGGTTTATAACCAATATCGAGCCTAGAACCTTCCATTGCCTGGACAACTGACTAGTTTATTACCAATATCGAGTCTAGAACCTTCCATTGCCTGGACAACTGACCTGGTTTATAACCAGATCAGACTGTGATCCTGTCAACTTCTTGACCATAACTAGACCTTAACTGCTCCGTCCTTACCCATAACCCCCAAACCACACATAGAACCCCAGCAATGTGACTACTGACAGGTTGCCCCATACTGGGCATTTATCACCCTCTTTTTGCTATTAGTTTAGCCTTGGTGTCGAGGCCCAGAGATTATGTCTTTCCAATACAGGGCTTGCCTTGCACTCACCACTGGTTGATTTTTCAACTTCACAAAGACTAAGAACTATGGAATCGTCCACTAACACTTTCTCACCTGCCTTGATTGCTGCTCCAACGAAATGTCAAGAGTTAAAGAGAACATGTGTGATCAGGACCGTACTGAGGGAAATGGAgggattttaattttttttttatcaacacaCCCAGATTATGCATTTtgaaagcactgtgtgtgtgttttaagcgTGAGTGGTACTACTGTATTTGCCAAGATTGAATAACATTCCAATGCACCAATAATATATTGCTGTGTTTCTCTGAGAATTTGCTACGCTTTATGAATGTAATTCTTCCTGTGGAAGTATGTGAGTGTCCGTGACTCTTGTAAAACCTGAACACTTGAGTTGATCtgatgcctgtgtgtttgtgcgtgtgtgtgcagggtTTTTTCTGCATAGAAAAGTCTTGGGCAAGACTTAATAAAAAATtattgagatgggaaaacattttcagtgtaaacttaaatgacttaaaccatatatatctatatatatataaaatatgatgatctttgagaactaacaatcaccccAAATAAAATCTAGCCCGTTAGGGAGAATCAAATATTAGAAAAATTATGCATTCAGTATTTTTGTCATGgcatggggcccccattgattttgttatgttTGAGTCACTCCGATAGCAAACAACgcataagccatggcaaaatgaaAATTTATATTGACAATTATTCTTCTCTCACATCATGAcatatgtgtagaattgcaggacatttTTTTTCTGCGGCCAAGAGGGCCTCTAAAATGTTCAGTCGGCAACCGCACTATTCACCACGCCCCCGTCACAGCCACGATCCTAACCGTaattttgatccagaaaaaaacctgGTGGGTGTGTGCACGTACACTCCTGTACGTATTTATTTGGACGCTGAAGCTAAAACGTTTTAATTCAGCTCTATACTTTAGCATTTTGGATttaagatcaaatgtttcatatgaggcgacagtacagcATGGCACCTTTTATTGTCaggtattttcatatatatcttttaccatttagaaatgaaagcactttatatGTATCTAGTCCTCCCATTTTAAAGGCGTCAAATACTTGAAACGTTCAAATAGGTGGACTAAATACACGAAGGGCTTTAATCTCTAAACGATAAAACGGATATGTATGagaataccctcaaataaaaaggtgacattctgtaccaTCTCCTCATATGAAACAATTGATCTCTGTAGAATAGCGGACCTAGAGTATCCAAGTGAGGTGACGGGTGGGAATGAGGTGATGTAACATTTTGTAACATTTATAAACCATTGCACCTGACCTAAATGCTGCTTTTATTAAAGGGAATTATTTTGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433615 lncRNA upstream 52314 31826074 ~ 31827843 (+) False G2128482
TU2433613 lncRNA upstream 52314 31826640 ~ 31827843 (+) True G2128482
TU2433583 lncRNA upstream 108872 31770896 ~ 31771285 (+) True G2128458
TU2433571 lncRNA upstream 110146 31769706 ~ 31770011 (+) True G2128452
TU2433244 lncRNA upstream 141106 31715995 ~ 31739051 (+) True G2128183
TU2433579 lncRNA downstream 306 31921254 ~ 31921755 (+) True LOC110508972
TU2433581 lncRNA downstream 1149 31922097 ~ 31922749 (+) True G2128456
TU2433750 lncRNA downstream 14359 31935307 ~ 31935580 (+) True LOC110508974
TU2433759 lncRNA downstream 24216 31945164 ~ 31948898 (+) True G2128614
TU2433813 lncRNA downstream 113873 32034821 ~ 32037428 (+) True G2128653
XM_021589903.2 mRNA upstream 5428 31870378 ~ 31874729 (+) False LOC110508971
XM_021589905.2 mRNA upstream 5428 31871489 ~ 31874729 (+) True LOC110508971
XM_036966622.1 mRNA upstream 76104 31794423 ~ 31804053 (+) False LOC110508969
XM_021589910.2 mRNA downstream 12814 31933762 ~ 31935806 (+) False LOC110508974
XM_036966510.1 mRNA downstream 13099 31934047 ~ 31935806 (+) False LOC110508974
XM_021589913.2 mRNA downstream 36687 31957635 ~ 31961212 (+) True cldn1
XM_021589914.2 mRNA downstream 94198 32015146 ~ 32020881 (+) True LOC110508980
XM_021589915.2 mRNA downstream 108641 32029589 ~ 32032860 (+) True LOC110508981
TU2433251 other upstream 140087 31739312 ~ 31740070 (+) True G2128189
TU2433149 other upstream 236695 31640302 ~ 31643462 (+) False LOC110508221
TU2433148 other upstream 236821 31640302 ~ 31643336 (+) False LOC110508221
TU2432265 other upstream 1238914 30640687 ~ 30641243 (+) True G2127299
TU2432201 other upstream 1311579 30534851 ~ 30568578 (+) True kcnn1a
TU2433758 other downstream 24216 31945164 ~ 31948302 (+) False G2128614
TU2433827 other downstream 132728 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other downstream 132821 32053769 ~ 32054943 (+) False LOC110508984
TU2433828 other downstream 132821 32053769 ~ 32055091 (+) False LOC110508984
TU2433832 other downstream 132821 32053769 ~ 32055655 (+) True LOC110508984

Expression Profile