RNA id: TU2433813


Basic Information

Item Value
RNA id TU2433813
length 1527
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G2128653
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32034821 ~ 32037428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACATTTGATCACTTTAATTATTAATTAATGTTGTTGCATGAAAGGCAATTTTTGCATACAAACATCAGCAACTGGATGTCCGAAAATGAGCAGAAAGTTCAAAGCATTCCTTCCTTTAATCCTTTTCCTCCTTGTCCCCAATAAAAAGACATCCAGCATCTCTAGTCATTCGTCTCAACCCCTCCCCTCTGCAGTAAATGTGCTATGGCCCAACACTCCCACTAGGTGGAGCTGTCACTCAAAGACAAATGAGGAGGGGCTTTGTAACGTGTGAGGTATTCAATTCATTTGAATGCCCTTGGTATTATTGACCATCAGTACCCATAAAATACATTCATACTACAAACTGCCTTTCCCCTACTCCCTTATTCCCCAAATACATAAAAACATGATCAAATATATACAAATTGAATATTTATCTCAAACTAACATTGTCAGTGAATTCTTGGATTTATCCAAACATTTTTGTTGATACCTGTAACGTCCCTGTTTTCCCATGATTCCATGCTTTGGTGATTCCATGATCACCCCTGAGATGAAAGGAGGTGAGAGATCAAAGGTGAGCATAACCCTTCATAGGCATCATAACAGCTTCAGCTCGATGaatgggcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgcgtgcatgtgtgaaaTGCATGCGAGTGTTAACTGTAAAGAAGTCACATTCATGAGCCTGTTCGAGTCAAACTTGATGGAGTCACTATGGGGAGAGCATTGTACCATTTTTACCCCCATGCATCATAAATCACTTTGAATTTCAATAAAAAGCTTAGTAAATGCTAAATAGTCATTGTCGGATGTTGCCCTCCATCTTGattggacaaacaaaacccagtCTGTGTTGGCGGTCTCAGACATTCCGTTTCAGGCAACTCCGATCTATTTTGAGCTCTAAACATCGCAGGACTACTTCTGTCTACACTCTTTATTCAGAAGTTGTGCTCGTCCTCCTCAGCAAcctattcctccctccatcttgcCCTATTTCCCTGTGTGTCTCTTCTTTGTGGTTCAAGGGCTGTGGTGGAGGGTCTCCAATCTAAACTCTGCTATGGCTGGTGGTGGGTCTCCAATCTAAACTCTGTTATGGCTGGTGGTGGGTCTCCAATTTAGACTCTGCTATGGCAGGTGGTGGGTCTCCAATCTAGACTGCTATGGCAGGTGGTGGGTCTCCAATCTAAACTCTGCTATGGCAGGTGGTGGGTCTCCAATCTAAACTCTGCTATGGCAGGTGGTGGGTCTCCAATCTAGACTCTGCTATGGCAGGTGGTGGGTCTCCAATCTAAACTCTGCTATGGCAGGTGGTGGGTCTCCAATCTAAACTCTGTTATGGCTGGTGGTGGGTCTCCAATCTAGACTCTGCTGTGGCTGGTGGCAGGCCTCAGCCTCATAGCCATACAGGAAGGTGGCAGCAAGGACCAGCACTGCTCCTAGGAAGAACacactgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433759 lncRNA upstream 85923 31945164 ~ 31948898 (+) True G2128614
TU2433750 lncRNA upstream 99241 31935307 ~ 31935580 (+) True LOC110508974
TU2433581 lncRNA upstream 112072 31922097 ~ 31922749 (+) True G2128456
TU2433579 lncRNA upstream 113066 31921254 ~ 31921755 (+) True LOC110508972
TU2433577 lncRNA upstream 114789 31918247 ~ 31920032 (+) False LOC110508972
TU2433856 lncRNA downstream 37567 32074995 ~ 32075781 (+) False G2128680
TU2433857 lncRNA downstream 37567 32074995 ~ 32075781 (+) False G2128680
TU2433858 lncRNA downstream 37567 32074995 ~ 32075781 (+) False G2128680
TU2433859 lncRNA downstream 37567 32074995 ~ 32075781 (+) True G2128680
TU2433873 lncRNA downstream 53477 32090905 ~ 32091522 (+) True G2128693
XM_021589915.2 mRNA upstream 1961 32029589 ~ 32032860 (+) True LOC110508981
XM_021589914.2 mRNA upstream 13940 32015146 ~ 32020881 (+) True LOC110508980
XM_021589913.2 mRNA upstream 73609 31957635 ~ 31961212 (+) True cldn1
XM_021589910.2 mRNA upstream 99015 31933762 ~ 31935806 (+) False LOC110508974
XM_036966510.1 mRNA upstream 99015 31934047 ~ 31935806 (+) False LOC110508974
XR_002471382.2 mRNA downstream 15803 32053231 ~ 32054953 (+) False LOC110508984
XM_021589920.2 mRNA downstream 50224 32087652 ~ 32098796 (+) True LOC110508986
XM_036966025.1 mRNA downstream 72342 32109770 ~ 32119075 (+) True si:ch211-13f8.2
XM_021589929.2 mRNA downstream 164387 32201815 ~ 32223340 (+) True LOC110508995
XR_002471387.2 mRNA downstream 231787 32269215 ~ 32274380 (+) False LOC110508999
TU2433758 other upstream 86519 31945164 ~ 31948302 (+) False G2128614
TU2433251 other upstream 294751 31739312 ~ 31740070 (+) True G2128189
TU2433149 other upstream 391359 31640302 ~ 31643462 (+) False LOC110508221
TU2433148 other upstream 391485 31640302 ~ 31643336 (+) False LOC110508221
TU2432265 other upstream 1393578 30640687 ~ 30641243 (+) True G2127299
TU2433827 other downstream 16248 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other downstream 16341 32053769 ~ 32054943 (+) False LOC110508984
TU2433828 other downstream 16341 32053769 ~ 32055091 (+) False LOC110508984
TU2433832 other downstream 16341 32053769 ~ 32055655 (+) True LOC110508984
TU2433942 other downstream 231890 32269318 ~ 32274380 (+) False G2128753

Expression Profile