RNA id: XM_021589913.2


Basic Information

Item Value
RNA id XM_021589913.2
length 1856
RNA type mRNA
GC content 0.46
exon number 4
gene id cldn1
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31957635 ~ 31961212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGAAATAGAATAACTGTTTTCAAAGTTGCCGAAATGCCACGTGCGTCCATTTATATCAGTGCATTCGTAATAACCTAACCATTACGAAACttatattcgatcaaataaggCTCTTGTAGCAAATTAGCAATTCCATTTTTCATTGACCAAATCCGACACTCTCATTGGCCATAAAATAATAACCTCACTTCGTGTTCTTATtttcgtggacagattttgggcggaGTAAACCCTCTcgcttcatctcctcctctctggctATACCTGAAGTTTTGAGGACTCTTCTGGAATTTGGGATGTTATGTGGATTTTCTGTGAATACTGAGTGGACCCAATTGATCTCTTCTATATTATTGAGGATTAATCTTTAATTTATTAACCATTTATTTAGTGAAATGGCAAACGCGGGGATACAGCTCCTTGGATTCGTCTTGTCTTTTATTGGCTTCATCGGGTTGATAGCATCCACGATCATGGCCGAGTGGAAACTGTCATCCTATGCTGGGGACAACATCATAACGGCGCAAGCCATGTACGAGGGGCTTTGGAAGTCTTGTGTGTCACAGAGCACTGGTCAAATCCAGTGTAAAGTGTACGATTCACTGCTCCAACTAACGGGGATGGTGCAGGGCACACGAGGTCTCATGGTGGGTGCCATCCTGTTGGCTGGCATTGCGATCCTGGTGGCCATGGTGGGCATGAAGTGTACCACCTGTCTGGCTGAGGACCAGGAGAAGAAGGACAAAGTTGCCCTGACTGGAGGAATCGTCATCATTATCGCAGGTCTGTGTGCTCTGGTGGGGACTTCCTGGTACGGGAACAGAATAGCAAAGGAATTCTACGACCCCTTCACTCCTACAAattccagGTATGAGTTTGGCAAGGCCCTGTTCGTAGGTTGGGGCTCTGCTTGCTTCACCATCATAGGTGGAGCCTTCCTCTGTTGCAACTGCTCCAGTGAAGGCTCAGGAAAGTCCTCCCGCTACCCCCCGAACCGCTCCGCTGCCCCACCAGGCAGAGACTACGTCTAGAGCCTGGGGATATCCAGGAgaccagggtcgtgttcattagggtagACGTTTCAAAATGTTGTGCAATGGAAATTGAAAGCAAGTCTTTACTTACTGGTCAGGTAGTGCCTTCCCGTTTCACTCCATTTAAGTCCGTTTTCCTCTGTTTTGTGCTGAACATGACCCACCTCCATCCAGCCACTCTCTATTCTGGGTACAGCACTGCCTAGGGTCAAAGCTGGGGTTATTTTTGTTGATTTGATGGTTGGTTTGGTTTGATTCATGATTTCTGTTATTTTCATTTCTGGTTGTTTTACTGTGAGACACTCCACTAGCAAGCAATATATCCATGATGCATACATACAGTACTCTATTACTATTTTCACACTATCGATTCAACCCAAACTGCACTGTGCTGGCTCTGATGTTTTCTTTCCACACCGTTCATGattccagcaactatggtggatgcGTAACGAGGACAGCACTGTTCAGCTCGGCCCCACTTAGttcggctcagtagtgtgaaaatagtatttgtgtgtagtttgagatgtacagtgcattcggaaagtatttagaccccttgactttttccacgttttgtgacattacagccttattctaaaatttattaaattgcccccccccccccccccccccctgtctgagatatctactgcagccctcatcttcCACATTCAACACCCATTCTGatagtcacattctgttaaaggtccccgaagcacacacatccctgggttgctcgtcttttcagtttgcttcagctagtgactggaacgagctacaacaaacactcaaactggacagttttatttccatc

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433759 lncRNA upstream 8737 31945164 ~ 31948898 (+) True G2128614
TU2433750 lncRNA upstream 22055 31935307 ~ 31935580 (+) True LOC110508974
TU2433581 lncRNA upstream 34886 31922097 ~ 31922749 (+) True G2128456
TU2433579 lncRNA upstream 35880 31921254 ~ 31921755 (+) True LOC110508972
TU2433577 lncRNA upstream 37603 31918247 ~ 31920032 (+) False LOC110508972
TU2433813 lncRNA downstream 73609 32034821 ~ 32037428 (+) True G2128653
TU2433856 lncRNA downstream 113783 32074995 ~ 32075781 (+) False G2128680
TU2433857 lncRNA downstream 113783 32074995 ~ 32075781 (+) False G2128680
TU2433858 lncRNA downstream 113783 32074995 ~ 32075781 (+) False G2128680
TU2433859 lncRNA downstream 113783 32074995 ~ 32075781 (+) True G2128680
XM_021589910.2 mRNA upstream 21829 31933762 ~ 31935806 (+) False LOC110508974
XM_036966510.1 mRNA upstream 21829 31934047 ~ 31935806 (+) False LOC110508974
XM_021589906.2 mRNA upstream 36687 31880157 ~ 31920948 (+) False LOC110508972
XM_021589908.2 mRNA upstream 36687 31880158 ~ 31920948 (+) False LOC110508972
XM_021589909.2 mRNA upstream 36687 31880158 ~ 31920948 (+) False LOC110508972
XM_021589914.2 mRNA downstream 53934 32015146 ~ 32020881 (+) True LOC110508980
XM_021589915.2 mRNA downstream 68377 32029589 ~ 32032860 (+) True LOC110508981
XR_002471382.2 mRNA downstream 92019 32053231 ~ 32054953 (+) False LOC110508984
XM_021589920.2 mRNA downstream 126440 32087652 ~ 32098796 (+) True LOC110508986
XM_036966025.1 mRNA downstream 148558 32109770 ~ 32119075 (+) True si:ch211-13f8.2
TU2433758 other upstream 9333 31945164 ~ 31948302 (+) False G2128614
TU2433251 other upstream 217565 31739312 ~ 31740070 (+) True G2128189
TU2433149 other upstream 314173 31640302 ~ 31643462 (+) False LOC110508221
TU2433148 other upstream 314299 31640302 ~ 31643336 (+) False LOC110508221
TU2432265 other upstream 1316392 30640687 ~ 30641243 (+) True G2127299
TU2433827 other downstream 92464 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other downstream 92557 32053769 ~ 32054943 (+) False LOC110508984
TU2433828 other downstream 92557 32053769 ~ 32055091 (+) False LOC110508984
TU2433832 other downstream 92557 32053769 ~ 32055655 (+) True LOC110508984
TU2433942 other downstream 308106 32269318 ~ 32274380 (+) False G2128753

Expression Profile