RNA id: TU2404329


Basic Information

Item Value
RNA id TU2404329
length 500
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2102045
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8935323 ~ 8935822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAATATAACTTTAACACAGACAAGCATGTTATTTACATGaacactaccattcaaaggtttgggggtcacttagaaatgtcttttgtttttgaaagaaaagcacatttttttgtcctttaaaataacatcaaattgatcagaaatgcagtgtagacattgttaatgttgtaaatgtctgttgtagctggaaatgggcctctgtacaacagttttcatctgtgctaacataattgcaaaagggttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacagcgtgccattggaacacaggagtgatggttgctgataatgggcctctgtatcaGCAACcaacactcctgtgttccaatggcatgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagatgaaaactgttgttctgattaaagaagcaataaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2404322 lncRNA downstream 12089 8923003 ~ 8923234 (-) True G2102039
TU2404250 lncRNA downstream 154034 8781024 ~ 8781289 (-) True G2101973
TU2404247 lncRNA downstream 159973 8775135 ~ 8775350 (-) True G2101970
TU2404243 lncRNA downstream 163100 8772006 ~ 8772223 (-) True G2101966
TU2404202 lncRNA downstream 170274 8699909 ~ 8765049 (-) True G2101932
TU2404331 lncRNA upstream 472 8936294 ~ 8936527 (-) True G2102047
TU2404327 lncRNA upstream 29388 8965210 ~ 8970410 (-) True G2102043
TU2404361 lncRNA upstream 45170 8980992 ~ 8981222 (-) True G2102077
TU2404367 lncRNA upstream 57107 8992929 ~ 8993845 (-) True G2102083
TU2404371 lncRNA upstream 65421 9001243 ~ 9001520 (-) True G2102087
XM_036966037.1 mRNA downstream 24822 8781818 ~ 8910501 (-) False epha4b
XM_036966038.1 mRNA downstream 24822 8781818 ~ 8910501 (-) False epha4b
XM_036966039.1 mRNA downstream 24822 8805364 ~ 8910501 (-) True epha4b
XM_036967086.1 mRNA downstream 337056 8522163 ~ 8598267 (-) True dnah9l
XM_036967087.1 mRNA downstream 413170 8480324 ~ 8522153 (-) False LOC118936616
XM_021588700.2 mRNA upstream 40877 8976699 ~ 8978156 (-) False LOC110508274
XM_021588982.2 mRNA upstream 58100 8993922 ~ 8995746 (-) True LOC110508456
XM_036966726.1 mRNA upstream 171352 9107174 ~ 9119100 (-) False LOC110508458
XM_036966727.1 mRNA upstream 171352 9107174 ~ 9123544 (-) False LOC110508458
XR_005040250.1 mRNA upstream 171352 9107174 ~ 9123546 (-) False LOC110508458
TU2403860 other downstream 452910 8481732 ~ 8482413 (-) True LOC118936616
TU2403666 other downstream 695470 8238144 ~ 8239853 (-) True G2101464
TU2403426 other downstream 776805 8158219 ~ 8158518 (-) True G2101243
TU2403222 other downstream 936458 7993411 ~ 7998865 (-) True LOC110508443
TU2402917 other downstream 1164140 7768416 ~ 7771183 (-) True LOC110508434
TU2404356 other upstream 41030 8976852 ~ 8978099 (-) True LOC110508274
TU2405120 other upstream 242512 9178334 ~ 9180150 (-) True LOC110508459
TU2405103 other upstream 295872 9231694 ~ 9255166 (-) False G2102731
TU2405308 other upstream 632144 9567966 ~ 9569051 (-) True G2102910
TU2405415 other upstream 840797 9776619 ~ 9776908 (-) True G2103015

Expression Profile