RNA id: TU2406436


Basic Information

Item Value
RNA id TU2406436
length 207
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2103917
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10705453 ~ 10705659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccatactaaataaatacaaaacaaaggaaataaaggtcagaacgtgacacatacaTCATTTAAAATCTTAACTTCTTGATAATCCAGCTgctttgtcagatttaaaaaatgctttacggcgaaagcataccatgcaattatctgaggacagcgcccagcatacaaaagcattaaaaacattttccaaaccagcagAGGCGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406392 lncRNA downstream 55450 10649682 ~ 10650003 (-) True G2103876
TU2406388 lncRNA downstream 59338 10645683 ~ 10646115 (-) True G2103872
TU2406387 lncRNA downstream 60232 10644942 ~ 10645221 (-) True G2103871
TU2406386 lncRNA downstream 60901 10644219 ~ 10644552 (-) True G2103870
TU2406385 lncRNA downstream 63338 10641904 ~ 10642115 (-) True G2103869
TU2406437 lncRNA upstream 67 10705726 ~ 10705929 (-) True G2103918
TU2406440 lncRNA upstream 3173 10708832 ~ 10709173 (-) True G2103921
TU2406410 lncRNA upstream 14493 10720152 ~ 10757337 (-) True G2103894
TU2406413 lncRNA upstream 32288 10737947 ~ 10824356 (-) True G2103897
TU2406489 lncRNA upstream 104379 10810038 ~ 10810541 (-) True G2103970
XM_021589069.2 mRNA downstream 13208 10689183 ~ 10692245 (-) True LOC110508508
XM_021589070.2 mRNA downstream 23706 10677802 ~ 10681747 (-) True LOC110508509
XM_021589058.2 mRNA downstream 165108 10535026 ~ 10540345 (-) True LOC110508501
XM_036966980.1 mRNA downstream 197104 10504714 ~ 10508349 (-) True LOC110508159
XM_036966617.1 mRNA downstream 241623 10418527 ~ 10463830 (-) True LOC110508497
XM_021589082.2 mRNA upstream 139556 10845215 ~ 10852874 (-) True LOC110508519
XM_036966705.1 mRNA upstream 163457 10869116 ~ 10884219 (-) False LOC110508520
XM_021589084.2 mRNA upstream 163457 10869116 ~ 10884459 (-) False LOC110508520
XM_021589087.2 mRNA upstream 163457 10869116 ~ 10884459 (-) False LOC110508520
XM_021589085.2 mRNA upstream 163457 10869116 ~ 10884590 (-) True LOC110508520
TU2405667 other downstream 498777 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 590056 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 697550 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 893595 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 928545 9776619 ~ 9776908 (-) True G2103015
TU2406439 other upstream 2353 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 180539 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 793467 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4834109 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4898026 15603685 ~ 15604463 (-) True G2109705

Expression Profile