RNA id: XM_036967892.1


Basic Information

Item Value
RNA id XM_036967892.1
length 5589
RNA type mRNA
GC content 0.49
exon number 33
gene id LOC110510053
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32003178 ~ 32021463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCCTGGACTATTTTTACAAACGATGACCAGTGCCTCTGATCTCCAACACTTGGGAACTAGGAGACATCCAACCCTGCTCCGGATATTCCTGCTGGTCCTTCTTCTCCATGTAGCCAGAGGAGATGTCactgcagaaacatctcaacctccacccttctcaccctctccttcATCATTACCACCACATGTTTTACTCCCTCCATTCTCTGCCCCGCTTCCTTCGAAATCAACTCCACCAAGAGCACCGCTTATAACAAACACTATATCAACTACACAGATGACAACCACATCAGTGTCTACCACCCAAAACACTGTAGCATCAATCATGCCACCTAGTAACACAACATCTACACCAGCTATAGCCACAACACCTGCAGCTCCATCAGCTATAGCCACAACACCTGCAGCTCCATCCGCTATAACCACAACACTTGCAGCTCCATCAGCTATAGCCACAACACCTGCAGCCCCATCAGCTATAGCCACAACACCTGCAGCTTCATCAGCTATAGCCACAACACCTGCAGCTCCATCAGCTAAAACCACAACACCTGCAGCTCCATCAGCTAAAACCACAACACCTGCAGCTCCATCAGCTATAGCCACAACACCTGCAGCCCCATCAGCTATAGCCACAACACCTGCAGCCCCATCAGCTATAGCAACAACACCTGCAGCTCCATCAGCTATAGCAACAACACTTGCAGCTCCATCAGCTATAGGCACAACACCTGCAGCTCCATCAGCTATAGCAACAACACCTGCAGCTCCATCAGCTATAGCCACAACACCTGCAGCTCCATCAGCCATCCTGTCCACAGCCACATTACCCACTACAGACATTTCTTCATCTAACACTCCAAACACGTCAACAATCTCGGTGCCCATGTCTAATGCATCCTCGACCCCACCCCCCACATCCCTCACAACCCCTCACCTATTACCACTGCACACTGCCTCATCCAACATGACTAATGAACCAATGACATCCACCATGCCATCTCCATCCACTATTCTGCACTCGACTTCGCCCATCATAACGTCCACTACCAACATGACCTCTAAAAATGCCACATCTCCAGGACCCTCCACTCCTTTGCCAATAACAGTCACCTCTAATGCCACTACAGAGTCAGCAGAGGTGCATTGTAACTTCTCACAGCTCTGTGCCAATCAGTCTGTGTACTACTGGATGGTCCTTGCGGTGGATGTGACTGGAGATCTGAAGAATGAATCAGACATCAGTGGCTGGTTCAGGGCTCTATTTCATTCTCTCTTGGACTCCTGTGAGCCCTCCAACCCTGAACAAGCAAATGGCACAAATTCGACTGACACACTGCAAACCACCTCTGTCAGTCCAACATATCCCACCCcctacaacatgacaacatggttaTACAACTTCACCACGACAACACTATCCCAGAACTTCACCAACTTCACCACGACAACACCATCCCAGAACTTCACCAACTTCACCACGACAACACTATCCCAGAACTTCACCAACTTCACCACGACAACACTATCCCAGAACTTCACCAACTTCACCACGACAACACCATCCCAGAACTTCACCAACTTCACCACGACAACACTATCCCAGAACTTCACCAACTTCAACATGACAACCTTGACAACTAACATGACAACTATGCTTTACAATAGTACTCCCCCACACAACCGTAGCATGTCCGCCCGACCCTACAACCATAGCACCACAAGTGAGGAGCATGAAGGTGGAAATATGACTGCTGCCAGCATGTTTCAAGACATTGAGGTGACGTGTGTCAATAAAACAGGGATCAGGAGGACTAACTGCACTGTGCTGCTGAGGACGAGGAAGCCAGCGTTTCCCTGTTGTTTCCAGCGAGCCCTGTGGCTGGGTCAGGAGAACAGCTCCATACAAACCCATATAGTGGGAAATAGAGTGGAGAGAGTGGGTAAGGGTCTGTGTGCAGGCCAATTGCCTCCAAGTAATGGTTTTGCAAAGTGCACCGGCTTCCTGAATGGCACTCTCCCTCTTCCAAACACGTGTCACACTCCAGGGCCTGTCAATATCTCATGTGGACATGCAGGGACTGTTTACGTACCACTTGGAAATCAAACCCAAATGGACTGTGGTTTGCCCCCTAAACCTCCCATCGATGCGGACATTGTCTGCAACTGCTCCTCTTACTGCTATGGTACagctGCATACTATACCTTGGGCATACAGATCAAAGATCCCGCTATGAATATTTCAAAAATCTTCTATATGATTGATCAGCTAAAAACTCCTCCACCCTGCAACAACACCTCAGAGACACATCCTCCCTGTCCCTTGCACATCATATCAACTATCTACCAGGATGCTCATGTGGAATGCGATGGCGCAAATACCAATCTCCAAAGCTGCAGGGTTATCGTGCGCCTCAACCATTCGGTGCCTATATGTGCAGTCAGTACTGCATTGATGACTGTGTTCAATGATGAGCATGGTATTGGCTACAATGGAACGGTGACCCGAGCAGCCATTTGTGGCTGCCCAGGATCCAGTGGCGGTCTATTAAATTCAAACTTCACTTGGGAGAGTATCAACCTCAACACCACTTTGTTCTGTGAGGCTGAAAAGACCACTGCCATTGTCAGCTGCAAACAAgggaaaaatgtgtgtgtgctcctgAATGAAATGTGCAACCCCATGCCTCCTTCTACATCACCCAGCCCAATGGCCAACACCACTTTACCTGCAACAACAATACTGCCTcctccacccaatgtcactataCACCTAAACACCCCCTACGTCCCATTGAACACAACATTAGCTCCACTAAACACCACTTCTACAGCTCCAAATACTACACCATCAGCTCCAAATACAACCATCGCCACGACAACCCGGGGTAATACCACTACAAACTCATCAACACCCATCATTCCACCAGTGAATCCCACAACAGCTTCCCCAAAGTACACCACGACAGCTGTTACAACAACCACCGCAGCGcccaacaccacagcagctagtAGTGAAGAGCAGGCCAATCAGCTGCTGGATCTGACTAGTAACGTGTCCAAGCTCAACTCCTCCCAGGTGGACCAGCTGGTGTCCCAACTAGAGGCCCTGCTGGCCGGACCCAATGTCAGCCTGAATCTGGGGAAAACCTCTGTCAAAATCGTTAGCAACCTGCTGGGTGCCTCCTCTGACACCCtggcctcctcctccaccaaGATCATTGGGATTGTTGATACGGTGGGCCTGAAGCTGGTCGTTCAGCAAGAGGCTACGATTTTAACCAAGTCGGTTGCTGTCGCTATCAAAACAGTGGACGGCACTAATTTCCAGCAAACATCTTTCTCCATCCCGGACCCCAACAATGTGCAGATCCGTGGAGATGGCAGAGCCAGGAGAAGTGTGAGAACAGAGGCGTCCTCCCTTCCCCAGGGCTCCGTCacgttcccctcctccctcacagcGAACCTCTCCTATGAGCAGCAGCTACAAGCCTCCAGACTCCAGTTCAACTTCTACcagaaggccactgtgttccagGACCGAGCCCTGGGAGACAGCAGGCTGTACAGTGGGATACTGGGAGCCAGTGTGGCCAACCTGTCAATCAAATCTCTGCAGAAGGACGTGGTGATCACCCTGAGAAACACTGAGCCCGTCCCATTGTCTACACAGGCAAATGTCgtggtttcatgtgttttctgggACTTTGGCTTGAATGATGGCTCAGGAGGCTGGAACCGAAAAGGCTGCTCTGTCAGGAACAGCACAGAAAATGAGACTGTCTGTGCCTGTAATCATCTCACCAGCTTCGGTGTGCTACTGGACATCTCCAGAACGGGCATAACCAATCATCTCCAGGCCACAATCCTCACCTACATCACCTACATCGGCTGTGGTATCTCCGCCATCTTCCTCTCCGTCACTCTGCTCACCTACCTGGCCTTTGGGAAACTGCGTAAGGACATCCCATCTAAGATCCTGATCCAGCTGTGTGTGGCTCTGTTGTTTTTAAACCTGGTGTTCCTGGTGGATGCCTGGCTAGCCCTCTACCCTGACGCTGTGGGCCTGTGCATCTCCACCGCCTGGTTCCTGCACTACTTCCTGCTGGCTTCCTTCACCTGGATGGGCCTGGAGGCCGTCCACATGTACCTGGCCCTCGTCAAGGTCTTCAACACATACATAAAACGCTACATGCTCAAGTTCTCTCTCGTCGGCTGGGGCGTCCCACTCCTTGTGGTCATCGTCGTTATTGCTGTTGATAAGAACAATTACGGCCTCGTTAgctacggaaagtattcagataacTCCCCTACAGATGACTTCTGCTGGCTGAAGAACAACATTGCCTTCTACGTATCTGTGGTGGCCTACTTCTGTGTCATCTTCCTGTTGAACCTCAGCATGTTTGTGGTGGTGATGGTTCAGCTGTGTCGGATAAAGAGtcagaacccccacaacatgaggcACCGTAACGGGCTGCAGGACCTGCGCAGTGTGGTTGGGATCACCCTACTCCTGGGCCTCACCTGGGGCTTTGCCTTCTTTGCCTGGGGGCCTGTCAACCTGGCCTTCATGTACCTCTTCGCCATCTTCAACTCCTTTCAAGGGTTCTTTATCTTTTTGTTCCACTGCGCTGTGAAGGAGAACGTGAGGAGGCAGTGGAGGACTTACCTCTGCTGTGGTAGACTGAGACTGGCAGAGAACTCAGACTGGAGCCGCACGGCTACACAGAAGACAGAGAAGAAGTCATTGTCAGTGACCAGAGCCACGTCCTTCCGCTCCGGCAACTCCTCCCAGTTCAACCATACCTCCAGCTCCTCCTTCTTGACCGGTGACTCCCCAGAGCGGCCCAGTGGAGCAACAGGAAGTCTATTTGATGACAGAACCATCACAGCCCTTGAGGAGCTCAACTCAGACGTGGTCCTCAATGAGGTGAACAGCCAATTCAGGACTCAGAGTCAGAGAGCAGCCTAAGTCCTGTAAAACACTAGGCCAAGTGTAGGCTGGTAGGGGAGTGGACTTACGTGAGACAGTGTGTTTCATAGTATTTTCTACGTTTATATGAATTATTTTAATATTAATGCTGCATTTAGTAGTTTAATGGAAGTGTGTGACAGACCACACTGAAGAGATGGGCCATCACTGAAGATCCAGCATGCTCATGGATTTCATCCAGTTGACCTACCAATACTATCATGAACTCGTCCGGGCTGGCACCTATGATTGTGAATATcaatacatgtactgtactgaaaAGATATCTACAGTAGCACGGAGGAAAAACCCAACTCTTACTGTAGATCCTCACGAGCGGCATCCTATGACTGCATACTACAGGTTTTATCGGTTTTCTCAGCATTCTTCAGAGGCGTGCGCTGACAAATACTAACACtgtcacttcctggtttgatttcaTTTAAGATAAAGGCAAAGCTCTTTTATACTGTACTCAGAATCAAGATATTTCCATgagatatatatgtatatatattttaaagaggCATCATAACAATGGGTGTATAATTCAACGTTATTTCACCAATAACAATTgtataaataaaatgaaatgttttattttaagcTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486392 lncRNA upstream 9147 31993385 ~ 31994084 (+) True G2175377
TU2486378 lncRNA upstream 45828 31942749 ~ 31957403 (+) True G2175372
TU2486384 lncRNA upstream 66238 31935545 ~ 31936993 (+) True LOC100136774
TU2486362 lncRNA upstream 103841 31899143 ~ 31899390 (+) True G2175362
TU2486361 lncRNA upstream 105237 31897725 ~ 31897994 (+) True G2175361
TU2486436 lncRNA downstream 13242 32034705 ~ 32034934 (+) True G2175411
TU2486759 lncRNA downstream 23730 32045193 ~ 32046928 (+) True G2175667
TU2486769 lncRNA downstream 38684 32060147 ~ 32060513 (+) True G2175677
TU2486770 lncRNA downstream 39116 32060579 ~ 32060901 (+) True G2175678
TU2486782 lncRNA downstream 99019 32120482 ~ 32120871 (+) True G2175685
XM_036968365.1 mRNA upstream 10431 31943605 ~ 31992800 (+) False LOC110510052
XM_021591335.2 mRNA upstream 10431 31977028 ~ 31992800 (+) False LOC110510052
XM_021591334.2 mRNA upstream 10431 31977060 ~ 31992800 (+) True LOC110510052
XM_021591332.2 mRNA upstream 66236 31931801 ~ 31936995 (+) False LOC100136774
XM_021591331.2 mRNA upstream 72401 31929170 ~ 31930830 (+) True LOC110510050
XM_036967598.1 mRNA downstream 47091 32068554 ~ 32091411 (+) False LOC110510056
XM_036967599.1 mRNA downstream 47094 32068557 ~ 32091411 (+) False LOC110510056
XM_036967601.1 mRNA downstream 58413 32079876 ~ 32092162 (+) False LOC110510056
XM_036967600.1 mRNA downstream 59536 32080999 ~ 32093481 (+) True LOC110510056
XM_036967407.1 mRNA downstream 94166 32115629 ~ 32150579 (+) False LOC110509425
TU2486351 other upstream 101995 31900981 ~ 31901236 (+) True LOC110509422
TU2486199 other upstream 391762 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 684854 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 1179087 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1535107 30463942 ~ 30468124 (+) True G2173841
TU2486438 other downstream 15584 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 100307 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1201354 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1201354 33222817 ~ 33235535 (+) True cxxc5a
TU2488718 other downstream 2109548 34131011 ~ 34135399 (+) True LOC110510125

Expression Profile