RNA id: TU2529698


Basic Information

Item Value
RNA id TU2529698
length 265
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G2211276
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 21303096 ~ 21303454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATAGTATGATAGCGGATCATCATGATTGCCATTGGAAGGTACATCTCTAAGGGGACACAGGGCCGTGAGCTCCAGATCCTCTATGTCTCGCTCTAGTCCACCTCCCATGCAGATCAAAGTTACAAAGAAGCCAAAGTCCCTGATGGAGTTGATCCTGCCTATCACAATGTCCCCTCGCTCAATGTCCCTGTACAAGAGATTTCTCCGTTCCTCAAACGACACCTCCATGAACTGCTCCAGAGGGGGCATGATGGCGTAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2529694 lncRNA downstream 1026 21301786 ~ 21302070 (-) True G2211273
TU2529671 lncRNA downstream 12820 21285905 ~ 21290276 (-) False G2211261
TU2529866 lncRNA upstream 49348 21352802 ~ 21360602 (-) True LOC110521545
TU2529933 lncRNA upstream 175299 21478753 ~ 21481081 (-) True G2211477
TU2529947 lncRNA upstream 180997 21484451 ~ 21484661 (-) True G2211490
TU2531297 lncRNA upstream 344149 21647603 ~ 21647833 (-) True G2212741
TU2531303 lncRNA upstream 348516 21651970 ~ 21652206 (-) True G2212747
XM_021599135.2 mRNA downstream 583364 20717114 ~ 20719732 (-) True LOC110521532
XR_002473156.2 mRNA downstream 588485 20705949 ~ 20714611 (-) True LOC110521534
XM_021599129.2 mRNA downstream 647764 20648384 ~ 20655332 (-) True plekhb2
XM_036968927.1 mRNA downstream 648108 20648384 ~ 20654988 (-) False plekhb2
XM_021599126.2 mRNA downstream 672327 20628580 ~ 20630769 (-) True cts12
XR_002473159.2 mRNA upstream 49261 21352715 ~ 21360879 (-) False LOC110521545
XM_021599152.2 mRNA upstream 363745 21667199 ~ 21800817 (-) False LOC110521548
XM_021599153.2 mRNA upstream 363745 21667199 ~ 21800817 (-) False LOC110521548
XM_021599155.2 mRNA upstream 363745 21667199 ~ 21800817 (-) False LOC110521548
XM_036968959.1 mRNA upstream 363745 21667199 ~ 21800817 (-) False LOC110521548
TU2529119 other downstream 779985 20518340 ~ 20523111 (-) False G2210769
TU2529121 other downstream 783554 20518340 ~ 20519542 (-) False G2210769
TU2528844 other downstream 1167881 20134136 ~ 20135215 (-) True LOC110521508
TU2528783 other downstream 1219512 20073489 ~ 20083584 (-) True LOC110521505
TU2526261 other downstream 2979691 18306119 ~ 18323405 (-) True LOC110521464
TU2529695 other upstream 1387 21304841 ~ 21306542 (-) True G2211274
TU2531311 other upstream 362510 21665964 ~ 21666615 (-) True G2212755
TU2531474 other upstream 604509 21907963 ~ 21910736 (-) True G2212908
TU2532098 other upstream 1682905 22986359 ~ 23001248 (-) True LOC110521564
TU2532275 other upstream 1875052 23178506 ~ 23179611 (-) True G2213654

Expression Profile