Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058483 |
| length | 698 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_029810 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 3891485 ~ 3908849 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006606 | protein import into nucleus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016605 | PML body | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-060825-212 | Predicted to enable metal ion binding activity. Predicted to be involved in protein import into nucleus. Predicted to be active in PML body. Orthologous to human RPAIN (RPA interacting protein). |
| ensembl_id | ENSDART00000134396 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058479 | lncRNA | upstream | 429690 | 3457557 ~ 3462861 (+) | True | XLOC_029808 |
| TCONS_00058478 | lncRNA | upstream | 434874 | 3448497 ~ 3457677 (+) | False | XLOC_029808 |
| TCONS_00061617 | lncRNA | upstream | 721451 | 3169745 ~ 3171100 (+) | False | XLOC_029807 |
| TCONS_00061616 | lncRNA | upstream | 1149683 | 2734234 ~ 2742868 (+) | True | XLOC_029804 |
| TCONS_00061615 | lncRNA | upstream | 1438537 | 2451902 ~ 2454014 (+) | True | XLOC_029800 |
| TCONS_00061618 | lncRNA | downstream | 107522 | 4016371 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00061619 | lncRNA | downstream | 108145 | 4016994 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00058492 | lncRNA | downstream | 108386 | 4017235 ~ 4027790 (+) | False | XLOC_029813 |
| TCONS_00058493 | lncRNA | downstream | 137922 | 4046771 ~ 4049096 (+) | True | XLOC_029813 |
| TCONS_00058496 | lncRNA | downstream | 423371 | 4332220 ~ 4335463 (+) | False | XLOC_029816 |
| TCONS_00058480 | mRNA | upstream | 347330 | 3501859 ~ 3545221 (+) | True | XLOC_029809 |
| TCONS_00058476 | mRNA | upstream | 763868 | 3118231 ~ 3128683 (+) | True | XLOC_029806 |
| TCONS_00058474 | mRNA | upstream | 1040266 | 2815021 ~ 2852285 (+) | False | XLOC_029805 |
| TCONS_00058473 | mRNA | upstream | 1182880 | 2693601 ~ 2709671 (+) | True | XLOC_029803 |
| TCONS_00058469 | mRNA | upstream | 1844750 | 2002804 ~ 2047801 (+) | False | XLOC_029798 |
| TCONS_00058484 | mRNA | downstream | 19140 | 3927989 ~ 3937715 (+) | True | XLOC_029811 |
| TCONS_00058485 | mRNA | downstream | 97988 | 4006837 ~ 4011049 (+) | True | XLOC_029812 |
| TCONS_00058486 | mRNA | downstream | 107422 | 4016271 ~ 4052298 (+) | False | XLOC_029813 |
| TCONS_00058488 | mRNA | downstream | 107434 | 4016283 ~ 4052298 (+) | False | XLOC_029813 |
| TCONS_00058489 | mRNA | downstream | 107452 | 4016301 ~ 4049215 (+) | False | XLOC_029813 |
| TCONS_00058477 | other | upstream | 721725 | 3170736 ~ 3170826 (+) | True | XLOC_029807 |
| TCONS_00058475 | other | upstream | 1058225 | 2815026 ~ 2834326 (+) | True | XLOC_029805 |
| TCONS_00058472 | other | upstream | 1328290 | 2564145 ~ 2564261 (+) | True | XLOC_029802 |
| TCONS_00058471 | other | upstream | 1418924 | 2473511 ~ 2473627 (+) | True | XLOC_029801 |
| TCONS_00058470 | other | upstream | 1845461 | 2002817 ~ 2047090 (+) | True | XLOC_029798 |
| TCONS_00058487 | other | downstream | 107424 | 4016273 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00058490 | other | downstream | 107522 | 4016371 ~ 4024957 (+) | False | XLOC_029813 |
| TCONS_00058491 | other | downstream | 108145 | 4016994 ~ 4024989 (+) | False | XLOC_029813 |
| TCONS_00058497 | other | downstream | 423371 | 4332220 ~ 4342767 (+) | False | XLOC_029816 |
| TCONS_00058507 | other | downstream | 1443222 | 5352071 ~ 5352187 (+) | True | XLOC_029826 |
