RNA id: TCONS_00058998


Basic Information

Item Value
RNA id TCONS_00058998
length 2422
RNA type processed_transcript
GC content 0.40
exon number 6
gene id XLOC_030174
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30723129 ~ 30727648 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acctgtgaaattatgaacccttattgtatactgtatgtattttaaatctgcaattcaatataaaatatatttccatacactacttaccttatgtttactcgtcgatctcaccaaagccacactctaaaaaatgctgggttggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtaataattaatactgtgacctcactgcttccttggattctgtgttctttacttgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgacccagctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataaTGGACtcgatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttgatcatccttactgatgattgctttatatctcatatattgatgtttgcacataattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgacttactgatgattcctgatttataaatgatgcaaatgtttttgaatgtatttcaaatatgcattttcttaagGTAATTTGTCTCATTTCAGTCTGATGCATTGTTACTGAACTTtagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaacccttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139796

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061719 lncRNA upstream 734698 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA upstream 734698 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061717 lncRNA upstream 770213 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA upstream 770213 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061720 lncRNA upstream 770213 29927543 ~ 29952916 (+) False XLOC_030159
TCONS_00061723 lncRNA downstream 52782 30780430 ~ 30916825 (+) False XLOC_030177
TCONS_00061724 lncRNA downstream 52782 30780430 ~ 30921998 (+) False XLOC_030177
TCONS_00061725 lncRNA downstream 52782 30780430 ~ 30974079 (+) False XLOC_030177
TCONS_00061726 lncRNA downstream 52916 30780564 ~ 30828980 (+) False XLOC_030177
TCONS_00061727 lncRNA downstream 52939 30780587 ~ 30814570 (+) False XLOC_030177
TCONS_00058997 mRNA upstream 21238 30699260 ~ 30701891 (+) True XLOC_030173
TCONS_00058995 mRNA upstream 25221 30680804 ~ 30697908 (+) False XLOC_030172
TCONS_00058996 mRNA upstream 28869 30682737 ~ 30694260 (+) True XLOC_030172
TCONS_00058992 mRNA upstream 50647 30624183 ~ 30672482 (+) False XLOC_030171
TCONS_00058993 mRNA upstream 50647 30635309 ~ 30672482 (+) False XLOC_030171
TCONS_00059001 mRNA downstream 14082 30741730 ~ 30749493 (+) False XLOC_030175
TCONS_00059003 mRNA downstream 14140 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059002 mRNA downstream 14140 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059005 mRNA downstream 31584 30759232 ~ 30770807 (+) True XLOC_030176
TCONS_00059007 mRNA downstream 258864 30986512 ~ 30995108 (+) True XLOC_030179
TCONS_00058994 other upstream 52860 30669121 ~ 30670269 (+) True XLOC_030171
TCONS_00058990 other upstream 114591 30607838 ~ 30608538 (+) False XLOC_030170
TCONS_00058982 other upstream 313889 30392419 ~ 30409240 (+) True XLOC_030167
TCONS_00058978 other upstream 556557 30166456 ~ 30166572 (+) True XLOC_030164
TCONS_00058976 other upstream 724282 29998762 ~ 29998847 (+) True XLOC_030162
TCONS_00059004 other downstream 16198 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059006 other downstream 52952 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059020 other downstream 820664 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059030 other downstream 1132423 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059033 other downstream 1216959 31944607 ~ 31944722 (+) False XLOC_030193

Expression Profile

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